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  • Deprecate `Format` class
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 35/100

    ome/ome-zarr-py#723 ·

    Maintainers usually reply within 3 days

  • More granular test files
    Open
    • Is something wrong?

    Difficulty 2/5 1-3 hours Newbie friendliness 58/100

    ome/ome-zarr-py#722 ·

    Maintainers usually reply within 3 days

  • Introduce dispatch class/function
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 35/100

    ome/ome-zarr-py#721 ·

    Maintainers usually reply within 3 days

  • Add a recommendation (SHOULD) for the use of the `.ome.zarr` suffix
    Open
    • Is something wrong?
    feature request

    Difficulty 2/5 1-3 hours Newbie friendliness 68/100

    ome/ngff#665 ·

    Maintainers usually reply within 1 day

  • getBatchAnnotationCounts() AttributeError: getAnnotationCounts cannot be used with different types of objects
    Open
    • Is something wrong?

    Difficulty 2/5 1-3 hours Newbie friendliness 62/100

    ome/omero-web#697 ·

  • Add BIA AI-Ready gallery as concrete examples for User Story 6. Image Archive
    Open
    • Is something wrong?

    Difficulty 2/5 1-3 hours Newbie friendliness 72/100

    ome/ngff-rfc8-revisions#50 ·

    Maintainers usually reply within 3 days

  • Migrate BF-linkcheck
    Open
    • Is something wrong?

    Difficulty 4/5 3-5 days Newbie friendliness 35/100

    ome/bio-formats-documentation#496 ·

  • make the navigation toctree for RFCs auto track new RFCs in the correct order
    Open
    • Is something wrong?
    documentation infra

    Difficulty 3/5 1-2 days Newbie friendliness 55/100

    ome/ngff#657 ·

    Maintainers usually reply within 1 day

  • Training crops cut from non-OME-Zarr sources
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 35/100

    ome/ngff-rfc8-revisions#47 ·

    Maintainers usually reply within 3 days

  • [HCS] Overview of HCS status
    Open
    • Is something wrong?
    HCS

    Difficulty 4/5 3-5 days Newbie friendliness 20/100

    ome/ngff-rfc8-revisions#45 · 1 comment ·

    Maintainers usually reply within 3 days

  • Coordinate transformations and coordinate systems: traits or first-class node fields?
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 30/100

    ome/ngff-rfc8-revisions#44 ·

    Maintainers usually reply within 3 days

  • Coordinate transforms that reference arrays need to be updated
    Open
    • Is something wrong?

    Difficulty 3/5 1-2 days Newbie friendliness 55/100

    ome/ngff-rfc8-revisions#42 · 3 comments · 1 reaction ·

    Maintainers usually reply within 3 days

  • Nodes should be able to indicate where they came from
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 35/100

    ome/ngff-rfc8-revisions#41 ·

    Maintainers usually reply within 3 days

  • Layer names
    Open
    • Is something wrong?

    Difficulty 3/5 1-2 days Newbie friendliness 57/100

    ome/napari-ome-zarr#176 · 2 comments · 1 reaction ·

  • Type should be used uniquely
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff-rfc8-revisions#40 ·

    Maintainers usually reply within 3 days

  • Where do scenes live?
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff-rfc8-revisions#38 · 1 comment ·

    Maintainers usually reply within 3 days

  • Node-to-node relationships vs top-down collections
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff-rfc8-revisions#36 · 2 comments ·

    Maintainers usually reply within 3 days

  • All references should be explicit and unconstrained by relative location
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff-rfc8-revisions#35 · 3 comments ·

    Maintainers usually reply within 3 days

  • HCS use cases
    Open
    • Is something wrong?
    HCS

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff-rfc8-revisions#33 · 3 comments · 1 reaction ·

    Maintainers usually reply within 3 days

  • Consolidated metadata for remote nodes?
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 35/100

    ome/ngff-rfc8-revisions#32 ·

    Maintainers usually reply within 3 days

  • Rework path
    Open
    • Is something wrong?

    Difficulty 4/5 3-5 days Newbie friendliness 38/100

    ome/ngff-rfc8-revisions#31 · 6 comments ·

    Maintainers usually reply within 3 days

  • General user stories for OME-Zarr (tied or not to particular RFCs)
    Open
    • Is something wrong?

    Difficulty 1/5 Under an hour Newbie friendliness 35/100

    ome/ngff#650 · 22 comments · 1 reaction · 1 assignee ·

    Maintainers usually reply within 1 day

  • UUIDs or not?
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff-rfc8-revisions#30 · 1 comment ·

    Maintainers usually reply within 3 days

  • fix bug in assigning PR reviewers
    Open
    • Is something wrong?
    bug documentation infra

    Difficulty 3/5 1-2 days Newbie friendliness 35/100

    ome/ngff#648 · 1 assignee ·

    Maintainers usually reply within 1 day

  • Unable to read dev version files
    Open
    • Is something wrong?

    Difficulty 2/5 1-3 hours Newbie friendliness 65/100

    ome/ome-zarr-py#714 · 2 comments ·

    Maintainers usually reply within 3 days

  • proposal: stable codes for spec rules, in a shared registry?
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 30/100

    ome/ngff#646 · 12 comments · 9 reactions ·

    Maintainers usually reply within 1 day

  • declare ome-zarr-ness via `zarr-conventions`
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff#644 · 2 reactions ·

    Maintainers usually reply within 1 day

  • Images with `omero` key have all layers/channels as grey
    Open
    • Is something wrong?

    Difficulty 4/5 1-2 days Newbie friendliness 55/100

    ome/napari-ome-zarr#174 · 2 comments · 1 reaction ·

  • Transformation "name": unique within what?
    Open
    • Is something wrong?
    0.6 post-release patch bug

    Difficulty 2/5 1-3 hours Newbie friendliness 63/100

    ome/ngff#641 · 1 comment ·

    Maintainers usually reply within 1 day

  • Are negative scale values allowed? (schema says > 0, prose says non-zero)
    Open
    • Is something wrong?
    0.6 post-release patch bug

    Difficulty 2/5 1-3 hours Newbie friendliness 52/100

    ome/ngff#637 · 4 comments · 1 reaction ·

    Maintainers usually reply within 1 day

  • Update the ome/ngff repository README
    Open
    • Is something wrong?
    documentation

    Difficulty 3/5 Half a day Newbie friendliness 55/100

    ome/ngff#636 ·

    Maintainers usually reply within 1 day

  • Clarify scale_factor behavior in _build_pyramid() docstring
    Open
    • Is something wrong?

    Difficulty 1/5 Under an hour Newbie friendliness 88/100

    ome/ome-zarr-py#708 ·

    Maintainers usually reply within 3 days

  • ND2Reader: IndexOutOfBoundsException
    Open
    • Is something wrong?

    Difficulty 3/5 1-2 days Newbie friendliness 62/100

    ome/bioformats#4495 ·

  • clarify byDimension transform metadata
    Open
    • Is something wrong?
    0.6 post-release patch

    Difficulty 2/5 1-3 hours Newbie friendliness 74/100

    ome/ngff#634 · 1 reaction · 1 assignee ·

    Maintainers usually reply within 1 day

  • ZstdCodec throws NegativeArraySizeException when the frame header omits the content size (e.g. ZSTD TIFFs written by libtiff)
    Open
    • Is something wrong?

    Difficulty 2/5 1-3 hours Newbie friendliness 68/100

    ome/ome-codecs#48 · 1 comment ·

  • "bioformats2raw.layout": 3, but with no XML crashes
    Open
    • Is something wrong?

    Difficulty 2/5 1-3 hours Newbie friendliness 76/100

    ome/napari-ome-zarr#173 ·

  • Update command-line utility profiling options for Java 11 and later
    Open
    • Is something wrong?

    Difficulty 3/5 1-2 days Newbie friendliness 55/100

    ome/bioformats#4494 ·

  • MDEmic - UI Rendering Issue
    Open
    • Is something wrong?

    Difficulty 3/5 1-2 days Newbie friendliness 54/100

    ome/omero-insight#514 · 1 comment ·

  • Incorrect images read from Andor Solis files
    Open
    • Is something wrong?
    patch release

    Difficulty 4/5 1-2 days Newbie friendliness 52/100

    ome/bioformats#4493 · 1 comment ·

  • Sort out the specialized-node-types vs traits issue
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    ome/ngff-rfc8-revisions#28 ·

    Maintainers usually reply within 3 days

  • LIFReader: Cannot invoke "String.equals(Object)" because "memBlockID" is null
    Open
    • Is something wrong?
    patch release

    Difficulty 3/5 1-2 days Newbie friendliness 58/100

    ome/bioformats#4492 · 1 comment ·

  • Add OME Figure to viewers?
    Open
    • Is something wrong?

    Difficulty 3/5 1-2 days Newbie friendliness 48/100

    ome/ome-ngff-validator#91 ·

  • Improve documentation of the "whys" behind OME-Zarr
    Open
    • Is something wrong?
    documentation

    Difficulty 3/5 1-2 days Newbie friendliness 35/100

    ome/ngff#631 ·

    Maintainers usually reply within 1 day

  • Nicer handling of loadOriginalMetadata() failures
    Open
    • Is something wrong?

    Difficulty 3/5 Half a day Newbie friendliness 55/100

    ome/omero-web#695 · 1 comment ·

  • Add Blender (with Microscopy nodes) to viewers
    Open
    • Is something wrong?

    Difficulty 2/5 Under an hour Newbie friendliness 62/100

    ome/ome-ngff-validator#90 · 4 comments ·

  • How do IDs & references work together?
    Open
    • Is something wrong?

    Difficulty 5/5 Over a week Newbie friendliness 35/100

    ome/ngff-rfc8-revisions#18 ·

    Maintainers usually reply within 3 days

  • Bug: Line with empty marker
    Open
    • Is something wrong?

    Difficulty 4/5 3-5 days Newbie friendliness 25/100

    ome/omero-cli-transfer#121 · 7 comments ·

  • Remove `attributes`
    May be free again Open
    • Is something wrong?

    ome/ngff-rfc8-revisions#14 · 1 assignee ·

    Maintainers usually reply within 3 days

  • Traits: combining traits across documents
    Open
    • Is something wrong?

    Difficulty 4/5 3-5 days Newbie friendliness 48/100

    ome/ngff-rfc8-revisions#8 ·

    Maintainers usually reply within 3 days

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