YuLab-SMU/enrichplot

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Visualization of Functional Enrichment Result

Stars: 260
Forks: 75
Open beginner issues: 0
Indexed issues: 122

Dominant language: R
License: No license data
Last GitHub push: Jun 26, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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98 open issues indexed

No colors with respect to fold change and no circular plot Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#330 · 3 comments · Opened Aug 30, 2025
Color and size of nodes and edges dependent on other variables Open

Difficulty 4/5 3-5 days Newbie friendliness 32/100

YuLab-SMU/enrichplot#327 · 2 comments · Opened Jul 10, 2025
cex_label_category in emapplot gone Open

emapplot

Difficulty 4/5 3-5 days Newbie friendliness 28/100

YuLab-SMU/enrichplot#322 · 3 comments · Opened Jun 1, 2025
how many geneIDsets can be plot at maximum using gseaplot2? Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#319 · 2 comments · Opened Apr 29, 2025
Inclusion and exclusion criteria used by dotplot Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#317 · 10 comments · 1 reaction · Opened Apr 11, 2025
emapplot is empty even with different files that worked before and generated emapplot. Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#310 · 11 comments · Opened Feb 10, 2025
Text label size on emmaplot Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#307 · 2 comments · Opened Jan 29, 2025
Dotplot Circle Size Ambiguous Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#305 · 1 comment · Opened Dec 12, 2024
How can we customize the color in the dotplot? I want to use the color from the darjeeling1 palette. Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#294 · 2 comments · Opened Sep 23, 2024
Ridgeplot Draws Empty Rows Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

YuLab-SMU/enrichplot#288 · 2 comments · Opened Aug 21, 2024
Textbook Lacks Important Details Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

YuLab-SMU/enrichplot#287 · Opened Aug 20, 2024
Textbook barplot Links to Wrong R Package Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

YuLab-SMU/enrichplot#286 · Opened Aug 20, 2024
How to set range of p.adjust in dotplot? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#285 · 2 comments · Opened Aug 13, 2024
Problem in cnetplot visualisation Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#284 · Opened Jul 30, 2024
how can i change the colour of category node of my own choice in cnetplot Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

YuLab-SMU/enrichplot#282 · 1 comment · Opened Jul 24, 2024
change edge color in cnetplot Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#278 · 8 comments · Opened Jul 4, 2024
p.adjust value not being rounded in `dotplot` Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#277 · 1 comment · Opened Jun 6, 2024
Use this package with Seurat? Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

YuLab-SMU/enrichplot#276 · 1 comment · Opened May 24, 2024
gene name in cnetplot--with own GO annotation data Open

Difficulty 4/5 3-5 days Newbie friendliness 32/100

YuLab-SMU/enrichplot#275 · 2 comments · Opened May 23, 2024
How can I change the width of each coloum in the heatmap in the treeplot? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#274 · 1 comment · Opened May 8, 2024
compareCluster dotplot: how to modify the genesets order Open

Difficulty 4/5 3-5 days Newbie friendliness 40/100

YuLab-SMU/enrichplot#272 · 1 comment · Opened Apr 11, 2024
unexpected change of default colors/theme with enrichplot Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#268 · 7 comments · Opened Jan 24, 2024
why does my treeplot only appear partially? Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#264 · 2 comments · Opened Dec 6, 2023
emapplot and cnetplot customization (compareCluster) Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

YuLab-SMU/enrichplot#261 · 5 comments · Opened Oct 28, 2023
show all nodes but show select labels in emapplot Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

YuLab-SMU/enrichplot#257 · 3 comments · Opened Oct 1, 2023
Upsetplot Question Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#252 · Opened Aug 24, 2023
Recolouring treeplot Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#250 · 1 comment · Opened Jul 30, 2023
Error in offspring.tbl_tree_item(.data = .data, .node = .node, tiponly = tiponly, : could not find function "offspring.tbl_tree_item" Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#249 · 3 comments · 1 reaction · Opened Jul 23, 2023
R-4.3.1: could not find function "offspring.tbl_tree_item" Open

Difficulty 3/5 1-2 days Newbie friendliness 28/100

YuLab-SMU/enrichplot#247 · 5 comments · Opened Jul 20, 2023
为什么treeplot画出来的Go term,字体没有颜色 Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#246 · 3 comments · Opened Jul 13, 2023
How to implement treeplot to genes Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

YuLab-SMU/enrichplot#241 · 4 comments · Opened May 10, 2023
Unable to alter any emapplot cluster parameters Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#240 · 1 comment · Opened May 5, 2023
gseaplot2()函数中 pvalue_table = T的副产品：显示信号通路名（不想要它，如何去除？） Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#238 · 1 comment · Opened Apr 25, 2023
Extract 1 term per cluster in TreePlot Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

YuLab-SMU/enrichplot#237 · Opened Apr 18, 2023
treeplot not working Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#234 · 1 comment · Opened Mar 21, 2023
How am I supposed to tell the function heatplot() the p-values? Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

YuLab-SMU/enrichplot#233 · 1 comment · 1 reaction · Opened Mar 14, 2023
treeplot.compareClusterResult : dot and tree overlap Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#232 · 5 comments · Opened Mar 13, 2023
Getting NA as gene Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

YuLab-SMU/enrichplot#231 · 1 comment · Opened Feb 26, 2023
dotplot cannot use pvalue to filter Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#230 · 1 comment · Opened Feb 21, 2023
error using emapplot on compareCluster results wit all GO onotologies Open

Difficulty 3/5 1-2 days Newbie friendliness 30/100

YuLab-SMU/enrichplot#228 · 6 comments · Opened Feb 17, 2023
Ridgeplot - upload data from external GSEA search? Open

Difficulty 5/5 Over a week Newbie friendliness 18/100

YuLab-SMU/enrichplot#227 · 1 comment · Opened Feb 16, 2023
enrichplot::emapplot() : transparency dependent on q-value? Open

Difficulty 5/5 Over a week Newbie friendliness 35/100

YuLab-SMU/enrichplot#226 · Opened Feb 10, 2023
enrichplot::ridgeplot: fill="qvalue" does not work Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

YuLab-SMU/enrichplot#225 · 1 comment · Opened Feb 8, 2023
Error in treeplot Overlap between dotplot and dendogram treeplot geneClusterPanel = "dotplot" Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#224 · 3 comments · Opened Feb 6, 2023
Emapplot compareCluster : How to remove the legend of the number of genes per circle? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#222 · 3 comments · Opened Feb 2, 2023
How to extract network (in cnetplot + emapplot) for export? Open

Difficulty 4/5 3-5 days Newbie friendliness 38/100

YuLab-SMU/enrichplot#220 · 4 comments · Opened Dec 23, 2022
Possible for adding the parameters to adjust the font in the cnetplot and emapplot? Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

YuLab-SMU/enrichplot#215 · Opened Nov 29, 2022
Treeplot: possible to add border color around tippoints for a feature/column in enrichResult? Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

YuLab-SMU/enrichplot#214 · 2 comments · Opened Nov 23, 2022
Plots that show circle size "Number of genes" should be "Gene Ratio" for gseaResult Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

YuLab-SMU/enrichplot#206 · Opened Oct 27, 2022
gseaplot2 pvalue_table Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

YuLab-SMU/enrichplot#203 · 2 comments · Opened Oct 18, 2022

YuLab-SMU/enrichplot

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