Use this package with Seurat?
Nobody has claimed this yet.
Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 15/100
- Issue type
- Feature
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- r
- Domain
- data-visualization
Research direction
The issue mentions enrichplot and Seurat, but names no repository files, tests, or entry points. Start by reviewing the linked enrichplot visualization examples and how Seurat produces differential-expression data; the issue does not define a concrete change or a clear completion condition.
Written by the indexing model from the issue text.
Description
Hi!
I have seen a very interesting reading using enrichplot in Visualization of functional enrichment result and I wanted to ask if there is a way of applying these codes to a Seurat object.
In concrete, from a Seurat object, I usually get DF of genes and pathways differentially expressed between conditions with columns like "PValue", "FDR", "NES", "logFC", ... and I wanted to use the plots of enrichplot package, but I haven't found the way
Thank you in advance!
Julia
- Dominant language
- R
- Stars
- 260
- Forks
- 75
- PR merge metrics
- No merged PRs in 30d
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