emapplot and cnetplot customization (compareCluster)
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Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 30/100
- Issue type
- Feature
- Clarity
- Mostly clear
- Activity status
- Stale
- Tech stack
- r
- Domain
- data-visualization
Research direction
Start by reproducing the reported behavior through the emapplot and cnetplot entry points using a compareCluster result. Check how arc or node colors, node-size variables, and the size legend are currently configured; done should mean supporting the requested colorblind palette, adjusted p-value sizing, and correct legend placement.
Written by the indexing model from the issue text.
Description
Hi there, I was wondering whether it is possible to customize each arc color for the nodes (or the entire color of the larger nodes, if possible) to a colorblind friendly palette. In addition, I have also had a hard time changing the variable associated with node size from default (number of genes) to adjusted p-value. Finally, the legend related to size is misplaced in my plot. How can I fix all of this, please? Any help would be appreciated.
See an image of what I mean for reference.
- Dominant language
- R
- Stars
- 260
- Forks
- 75
- PR merge metrics
- No merged PRs in 30d
Contributor guide
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First steps
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- Open a pull request that references the issue number.
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