DiamondLightSource/python-murfey

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Client-Server architecture hauling Cryo-EM data around systems

Stars: 2
Forks: 1
Open beginner issues: 0
Indexed issues: 34
Avg merge: 1d 10h
Merged PRs (30d): 19

Dominant language: Python
License: BSD-3-Clause
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

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34 open issues indexed

Restructure the data collection group tags to use the rsyncer table Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

DiamondLightSource/python-murfey#792 · Opened Apr 30, 2026
Rsyncers don't start correctly on reconnect Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

DiamondLightSource/python-murfey#791 · Opened Apr 29, 2026
CrYOLO model path caching means changes are not detected during collection Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DiamondLightSource/python-murfey#646 · Opened Aug 5, 2025
Add server-side endpoints to handle processing of XRM files Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DiamondLightSource/python-murfey#630 · Opened Jul 14, 2025
Add database tables to store XRM workflow metadata as needed Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

DiamondLightSource/python-murfey#629 · Opened Jul 14, 2025
Add analyser and context logic for XRM workflow Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

DiamondLightSource/python-murfey#628 · Opened Jul 14, 2025
Add logic to automate XRM data transfer and processing workflow Open

client enhancement server xrm

Difficulty 5/5 Over a week Newbie friendliness 15/100

DiamondLightSource/python-murfey#627 · Opened Jul 14, 2025
Spaces in file paths still cause problems Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

DiamondLightSource/python-murfey#619 · Opened Jul 3, 2025
API endpoints in "murfey.server.api.spa" might be vestigial and can be removed Open

Difficulty 4/5 3-5 days Newbie friendliness 28/100

DiamondLightSource/python-murfey#596 · 1 comment · Opened May 21, 2025
The cleanup function doesn't fully wipe the database of entries related to that particular session Open

bug server

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DiamondLightSource/python-murfey#581 · 1 comment · Opened Apr 15, 2025
Cleaner rsync still submits messages to server Open

bug client

Difficulty 3/5 1-2 days Newbie friendliness 40/100

DiamondLightSource/python-murfey#580 · Opened Apr 15, 2025
The "allow_removal" MachineConfig key doesn't work Open

client

DiamondLightSource/python-murfey#562 · 1 assignee · Opened Apr 8, 2025
No logic to handle case where no microscope image is provided for the frontend Open

bug server web ui

Difficulty 2/5 Half a day Newbie friendliness 45/100

DiamondLightSource/python-murfey#551 · Opened Mar 31, 2025
Finalising all rsyncers through the instrument server seems to cause connection issues with the database Open

bug web ui

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DiamondLightSource/python-murfey#530 · 1 comment · Opened Mar 21, 2025
Add MachineConfig key to set whether and how permissions are modified when transferring files via rsync Open

enhancement

DiamondLightSource/python-murfey#489 · 1 assignee · Opened Feb 12, 2025
Murfey validates ALL MachineConfigs in the MachineConfig file Open

bug server

Difficulty 3/5 1-2 days Newbie friendliness 48/100

DiamondLightSource/python-murfey#488 · Opened Feb 12, 2025
RSync URL for instrument server setup Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DiamondLightSource/python-murfey#474 · Opened Jan 30, 2025
Murfey server still looks for security configuration file path from environment variable instead of machine configuration Open

bug server

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DiamondLightSource/python-murfey#397 · 2 comments · Opened Nov 6, 2024
Refactor SQL tables, API endpoints, and feedback-callback function into submodules Open

enhancement

DiamondLightSource/python-murfey#375 · 1 assignee · Opened Oct 18, 2024
Handle instrument server post failures Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DiamondLightSource/python-murfey#348 · Opened Sep 27, 2024
Remove the tilt offset parameter for tomography Open

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

DiamondLightSource/python-murfey#347 · Opened Sep 26, 2024
Murfey for CryoCLEM Open

cryo-clem enhancement

Difficulty 5/5 Over a week Newbie friendliness 10/100

DiamondLightSource/python-murfey#288 · Opened May 23, 2024
Coordination of different rsync threads Open

DiamondLightSource/python-murfey#251 · 1 assignee · Opened Apr 9, 2024
When destinations are explicitly added for existing sources they should be created Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DiamondLightSource/python-murfey#236 · Opened Mar 22, 2024
Develop unit tests for API endpoints Open

DiamondLightSource/python-murfey#235 · 1 assignee · Opened Mar 22, 2024
Record position tracking data in ISPyB tables Open

position tracking

DiamondLightSource/python-murfey#234 · 1 assignee · Opened Mar 21, 2024
Better handling of ISPyB lookup of session ID failure needed Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

DiamondLightSource/python-murfey#229 · Opened Mar 11, 2024
Record dose for each movie as measured during acquisition Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

DiamondLightSource/python-murfey#213 · Opened Jan 24, 2024
Add option to disable alertmanager monitoring Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DiamondLightSource/python-murfey#200 · Opened Dec 13, 2023
Register processing parameters to provide users with more detail Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

DiamondLightSource/python-murfey#199 · Opened Dec 13, 2023
Add more tests for server side Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

DiamondLightSource/python-murfey#195 · Opened Dec 8, 2023
Configurable processing and processing parameters Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

DiamondLightSource/python-murfey#151 · Opened Mar 28, 2023
Show pixel size in Angstroms Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

DiamondLightSource/python-murfey#111 · Opened Nov 14, 2022
Add a time API call to get current server time Open

Difficulty 3/5 1-2 days Newbie friendliness 38/100

DiamondLightSource/python-murfey#56 · Opened Apr 14, 2022

DiamondLightSource/python-murfey

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