Add voltage collages to BluePyMM

Open
#156 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
35/100
Issue type
Feature
Clarity
Mostly clear
Activity status
Stale
Tech stack
python
Domain
backend, data-visualization

Research direction

No file or test is named. Start by tracing the BluePyMM workflow that generates sample-cell voltage traces, then determine where reinjecting threshold and holding currents can be added and how collages should be produced. Done means representative neocortex outputs are visually reviewable for failures and eFEL artifacts.

Written by the indexing model from the issue text.

Description

We should add a step that generates voltage collages of the traces generated by a sample of the cells.

E.g. for neocortex it would be useful to reinject the threshold / holding current in the cells and plot the output.

This way a human can check if everything is working correctly. (and if e.g. eFEL is not creating any weird artifacts)

Dominant language
Python
Stars
13
Forks
9
No merged PRs in 30d

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

More from BlueBrain/BluePyMM

All issues in BlueBrain/BluePyMM

Similar issues

More Python issues

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.