Layer reading is wrong in circuit mvd3 branch
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Assessment
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Newbie friendliness
- 62/100
Research direction
Start by reading bluepymm/prepare_combos/parse_files.py at line 158 and inspect how the layer is currently read. Compare that logic with circuitmvd3_file['library']['layer']; the work is done when layer values come from the MVD3 file's layer mapping.
Written by the indexing model from the issue text.
Description
As mentioned by @wizmer, the layer is not read correctly in:
https://github.com/BlueBrain/BluePyMM/blob/read_mvd3_dontmerge/bluepymm/prepare_combos/parse_files.py#L158
It needs to use the layer mapping in the mvd3 file at
circuitmvd3_file['library']['layer']
- Dominant language
- Python
- Stars
- 13
- Forks
- 9
- PR merge metrics
- No merged PRs in 30d
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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