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py38 functional tests run forever

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Assessment

Difficulty
3/5
Estimated time
1-2 days
Newbie friendliness
45/100
Issue type
Bug
Clarity
Mostly clear
Activity status
Stale
Tech stack
pandas, python
Domain
testing-qa

Research direction

Start with the functional test for select_combos based on the example simple1, then inspect bluepymm/select_combos/reporting.py around lines 313 and 379-384. Reproduce the run and determine what happens after the final log output; done means the test completes instead of freezing.

Written by the indexing model from the issue text.

Description

The run step freezes after bluepymm.select_combos: test select_combos based on example simple1 test is executed.

Here is the last log produced, nothing else gets written after this log.

   bluepymm.select_combos: test select_combos based on example simple1 ... /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:379: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    ext_neurondb = ext_neurondb.append(emodel_ext_neurondb_rows)
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:381: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    megate_passed_all = megate_passed_all.append(
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:383: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    median_scores = median_scores.append(emodel_median_scores)
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:384: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    passed_combos = passed_combos.append(emodel_passed_combos)
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:379: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    ext_neurondb = ext_neurondb.append(emodel_ext_neurondb_rows)
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:381: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    megate_passed_all = megate_passed_all.append(
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:383: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    median_scores = median_scores.append(emodel_median_scores)
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:384: FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
    passed_combos = passed_combos.append(emodel_passed_combos)
  /home/runner/work/BluePyMM/BluePyMM/bluepymm/select_combos/reporting.py:313: UserWarning: Tight layout not applied. The bottom and top margins cannot be made large enough to accommodate all axes decorations.
    plt.tight_layout()
  ok
Dominant language
Python
Stars
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Forks
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No merged PRs in 30d

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