Mountainsort4 errors when running on example recording, windows 11
维护者通常 2 天内回复
还没有人认领这个 Issue。
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调研方向
Start by reviewing the attached spikeinterface_log.json and the reported old_api_utils code path for the location property, then run the provided toy_example with Mountainsort4 to reproduce the error. Done means the example runs successfully with Mountainsort4; the issue does not identify a specific file to change or establish the cause.
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描述
Hi all,
First, thanks for the amazing work with spikeinterface. I'm looking into it again after a few years and the progress since then is really impressive!! This is really much appreciated.
My current problem is with running Mountainsort 4 via spike interface, either on my own data or on the dummy data created in this page.
(code for the dummy recording:
this_rec, _ = se.toy_example( duration=30, seed=0, num_channels=64, num_segments=1
)
I'm getting an error during the running of Mountainsort 4 which probably has a really easy fix, but I'm not sure how to find out what it is:
v = values[ind[0]]
TypeError: 'NoneType' object is not subscriptable
Attaching the spikeinterface_log.json file:
spikeinterface_log.json
I get the same error whether I run it after installing it, or with the "Docker".
Looking more into it the error seems to relate to this code in 'old_api_utils' when 'property' = location,
but I'm not sure how to fix that:
Any suggestions? thanks a lot in advance!
--- minimal code example that recreates the problem ---
import spikeinterface.sorters as ss
import spikeinterface.extractors as se
sorter_name = 'mountainsort4' # note that if you use mountainsort5 here, it works
use_docker = False
overwrite_sorting = True
test_sort_folder = r"./temp"
this_rec, _ = se.toy_example(
duration=30,
seed=0,
num_channels=64,
num_segments=1
)
print('Running sorter ' + sorter_name)
test_sorting = ss.run_sorter(sorter_name=sorter_name,
recording=this_rec, verbose = True,
folder= test_sort_folder,
docker_image= use_docker, remove_existing_folder=overwrite_sorting)
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