JSON schema: Chipseq

#458 aperta il 25/3/2025 0 commenti 0 reazioni 1 assegnatario Vedi su GitHub

@ftamiro ci sta già lavorando.

Dal 25/3/2025.

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Fork the pipeline to your user account, if you have not done so before (Make sure you deselect Copy the master branch only)
Go to the dev branch and sync the upstream changes (Sync fork -> Update branch)
Create a branch called json-schema-improvements with the dev branch as base in the fork
Open the json-schema-improvements branch of the fork either locally (git clone) or online (via Github Codespaces, GitPod...)
Open the nextflow_schema.json file
Check that the value in "$schema" is "https://json-schema.org/draft/2020-12/schema". The pipeline should be updated to nf-schema if this is not the case. See the migration guide on how to do this
Check the schema for insufficient validation keywords and error messages. See the guide for more information on this
Do the same thing for assets/schema_input.json
Run nextflow run main.nf -profile test,docker --outdir results -stub to check for any failures in validation with the basic test setup
Update the changelog of the pipeline
Push all changes to your fork (if you have not done so yet)
Open a pull request to the dev branch of the nf-core repository
Request a review in #hackathon-mar-2025-json-schema-improvements or in the pipeline channel (e.g. #sarek for nf-core/sarek) and set the issue status to Ready to review (PR: https://github.com/nf-core/pacvar/pull/28)
Wait for approval and merge the pull request once everything works again
Set the issue status to Done

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