DiamondLightSource/httomo

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High-throughput tomography pipeline

Stars: 10
Forks: 5
Open beginner issues: 0
Indexed issues: 116
Avg merge: 5d 17h
Merged PRs (30d): 1

Dominant language: Python
License: No license data
Last GitHub push: Aug 27, 2026
Latest indexed: Sep 15, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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116 open issues indexed

Creating pipelines zip archive in docs CI on every push to a PR branch Open

ci

Difficulty 1/5 Under an hour Newbie friendliness 88/100

DiamondLightSource/httomo#714 · Opened Apr 22, 2026
Revisit if halving of `--max-memory` value is appropriate Open

Difficulty 4/5 3-5 days Newbie friendliness 48/100

DiamondLightSource/httomo#707 · Opened Apr 7, 2026
Failing `save_intermediate_data` method MPI tests Open

testing

Difficulty 3/5 1-2 days Newbie friendliness 48/100

DiamondLightSource/httomo#705 · 1 comment · Opened Apr 2, 2026
Multiple tmp dirs created but only one used for file-backed dataset store Open

framework minor

Difficulty 2/5 1-3 hours Newbie friendliness 72/100

DiamondLightSource/httomo#699 · Opened Mar 30, 2026
Unnecessary `docs/index.html` file? Open

documentation question

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

DiamondLightSource/httomo#697 · Opened Mar 26, 2026
Function determining dataset store backing incorrectly assumes new numpy array is always created by reader Open

Difficulty 3/5 1-2 days Newbie friendliness 68/100

DiamondLightSource/httomo#693 · Opened Mar 24, 2026
Fragmentation of the global CuPy memory pool Open

Difficulty 5/5 Over a week Newbie friendliness 30/100

DiamondLightSource/httomo#667 · Opened Dec 18, 2025
Redundant logging of GPU ID in data transfer method Open

logging minor

Difficulty 1/5 Under an hour Newbie friendliness 55/100

DiamondLightSource/httomo#658 · Opened Dec 5, 2025
`DataSetBlock` constructor takes some params with padding applied but also takes in the padding value Open

framework refactor

Difficulty 4/5 3-5 days Newbie friendliness 45/100

DiamondLightSource/httomo#645 · Opened Oct 24, 2025
Document that block splitter doesn't know about padding when reading blocks Open

documentation framework

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

DiamondLightSource/httomo#642 · Opened Oct 20, 2025
OutputRef cannot be accessed in a method when padding Open

Difficulty 3/5 1-2 days Newbie friendliness 25/100

DiamondLightSource/httomo#632 · Opened Oct 2, 2025
Incorrect type of `start_offset` and `stop_offset` keys in `StartStopEntry` Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

DiamondLightSource/httomo#611 · Opened Jul 28, 2025
Incorrect type of `start` and `stop` keys in `StartStopEntry` Open

Difficulty 1/5 Under an hour Newbie friendliness 58/100

DiamondLightSource/httomo#610 · Opened Jul 28, 2025
Incorrect type of key in `StartStopEntry` for representing a key that may not be present Open

Difficulty 1/5 Under an hour Newbie friendliness 72/100

DiamondLightSource/httomo#609 · Opened Jul 25, 2025
Incorrect type of key in `PreviewParam` for representing a key that may not be present Open

Difficulty 1/5 Under an hour Newbie friendliness 52/100

DiamondLightSource/httomo#608 · Opened Jul 25, 2025
Inappropriate tuple-like type for `UserDefinedAngles` Open

Difficulty 2/5 1-3 hours Newbie friendliness 62/100

DiamondLightSource/httomo#607 · Opened Jul 25, 2025
Inappropriate tuple-like type for `RawAngles` Open

Difficulty 2/5 1-3 hours Newbie friendliness 52/100

DiamondLightSource/httomo#606 · Opened Jul 25, 2025
Add ignoring a specific subset of darks and/or flats feature to `StandardTomoLoader` Open

enhancement loader

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DiamondLightSource/httomo#603 · Opened Jul 24, 2025
Handle numpy `_ArrayMemoryError` in reslice `np.concatenate()` call to avoid deadlock in multi-process runs Open

bug

Difficulty 4/5 3-5 days Newbie friendliness 45/100

DiamondLightSource/httomo#602 · 3 comments · Opened Jul 17, 2025
Include MPI process rank in exception log messages Open

logging minor

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

DiamondLightSource/httomo#601 · Opened Jul 17, 2025
Validate fields given in `preview` loader parameter Open

Difficulty 3/5 1-2 days Newbie friendliness 48/100

DiamondLightSource/httomo#597 · Opened Jun 4, 2025
Some UI layer tests take longer than expected to run Open

testing

Difficulty 3/5 1-2 days Newbie friendliness 42/100

DiamondLightSource/httomo#593 · Opened May 28, 2025
Failing conda env creation command in installation docs Open

bug documentation

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

DiamondLightSource/httomo#591 · 2 comments · Opened May 20, 2025
Pascal case instance attribute in `UiLayer` Open

minor

Difficulty 2/5 1-3 hours Newbie friendliness 58/100

DiamondLightSource/httomo#589 · Opened May 15, 2025
Document pipeline transformations applied by `UiLayer` Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

DiamondLightSource/httomo#585 · Opened May 15, 2025
UI layer test name lacks information on what it's testing Open

testing

Difficulty 1/5 Under an hour Newbie friendliness 55/100

DiamondLightSource/httomo#584 · Opened May 15, 2025
Out of date mention of python pipelines in `UiLayer` docstring Open

documentation

Difficulty 1/5 Under an hour Newbie friendliness 65/100

DiamondLightSource/httomo#582 · Opened May 12, 2025
Inconsistent creation of blocks by test loader compared to real loader Open

testing

Difficulty 3/5 1-2 days Newbie friendliness 55/100

DiamondLightSource/httomo#579 · Opened May 8, 2025
Code block not rendered in docs Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DiamondLightSource/httomo#576 · Opened Apr 28, 2025
Consider removing unused plumbum dependency Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

DiamondLightSource/httomo#568 · Opened Apr 9, 2025
Some framework tests require tomopy Open

testing

Difficulty 5/5 Over a week Newbie friendliness 30/100

DiamondLightSource/httomo#565 · 1 comment · Opened Apr 3, 2025
Unnecessary `typing_extensions` dev dependency Open

packaging

Difficulty 1/5 Under an hour Newbie friendliness 38/100

DiamondLightSource/httomo#563 · Opened Mar 27, 2025
Pyright error if `import httomo` used instead of `import httomo.globals` Open

minor

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

DiamondLightSource/httomo#561 · Opened Mar 21, 2025
preview is smaller than the padded data Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

DiamondLightSource/httomo#548 · Opened Feb 17, 2025
Document method wrappers which transform the `auto` value for a parameter Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

DiamondLightSource/httomo#547 · Opened Feb 17, 2025
Unnecessary setting of `parameters["in_file"]` in `UiLayer._setup_loader()` Open

minor

Difficulty 1/5 Under an hour Newbie friendliness 55/100

DiamondLightSource/httomo#546 · Opened Feb 17, 2025
Loader factory function doesn't use `MethodRepository` or `module_path` params Open

loader

Difficulty 5/5 Over a week Newbie friendliness 25/100

DiamondLightSource/httomo#533 · Opened Dec 11, 2024
Old preview syntax in testing pipeline Open

minor

Difficulty 1/5 Under an hour Newbie friendliness 55/100

DiamondLightSource/httomo#525 · Opened Nov 6, 2024
YAML with a colon but no space is valid YAML, but produces a string instead of a map Open

question

Difficulty 5/5 Over a week Newbie friendliness 25/100

DiamondLightSource/httomo#524 · 1 comment · Opened Nov 6, 2024
fixing versions for dependencies Open

question

Difficulty 4/5 3-5 days Newbie friendliness 32/100

DiamondLightSource/httomo#518 · 1 comment · Opened Oct 29, 2024
Potentially confusing print by YAML checker when checking a loader is first in the pipeline Open

Difficulty 1/5 Under an hour Newbie friendliness 55/100

DiamondLightSource/httomo#515 · Opened Oct 28, 2024
Revaluate whether `StandardLoaderWrapper` is needed or not Open

loader refactor

Difficulty 4/5 3-5 days Newbie friendliness 45/100

DiamondLightSource/httomo#504 · Opened Oct 21, 2024
Sort out inconsistencies and oddities with the loader's YAML template and how a loader is referenced in a pipeline file Open

loader refactor

Difficulty 5/5 Over a week Newbie friendliness 30/100

DiamondLightSource/httomo#501 · 1 reaction · Opened Oct 21, 2024
Inconsistent docstring format across codebase Open

documentation

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DiamondLightSource/httomo#499 · 1 comment · Opened Oct 18, 2024
`cufft.py` module excluded from API docs Open

documentation memory-estimation

Difficulty 4/5 3-5 days Newbie friendliness 25/100

DiamondLightSource/httomo#498 · Opened Oct 18, 2024
Sphinx docs build in CI produces warning due to import error when importing `httomo.cli` module Open

ci documentation

Difficulty 4/5 3-5 days Newbie friendliness 35/100

DiamondLightSource/httomo#495 · 1 comment · Opened Oct 17, 2024
Unnecessary `nvtx` dependency Open

minor

Difficulty 1/5 Under an hour Newbie friendliness 55/100

DiamondLightSource/httomo#493 · Opened Oct 16, 2024
Combining `|` and `xp.ndarray` in a type causes warning in sphinx API docs build Open

bug documentation

Difficulty 3/5 1-2 days Newbie friendliness 48/100

DiamondLightSource/httomo#492 · 2 comments · Opened Oct 16, 2024
Unnecessary list of one element per iteration in loop in YAML checker? Open

question refactor

Difficulty 2/5 1-3 hours Newbie friendliness 35/100

DiamondLightSource/httomo#477 · Opened Oct 11, 2024
Methods without a `side_outputs` field may be unnecessarily included in `method_id_map` Open

question refactor

Difficulty 3/5 1-2 days Newbie friendliness 45/100

DiamondLightSource/httomo#475 · Opened Oct 10, 2024

DiamondLightSource/httomo

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