Owner

CCBR

已索引 34 个仓库 · 在 GitHub 查看

• RENEE

  A comprehensive quality-control and quantification RNA-seq pipeline

  Python · 8 个 star

• XAVIER

  An easy-to-use, flexible variant calling pipeline for whole exome sequencing

  Python · 6 个 star

• METRO

  Mouse nEoanTigen pRedictOr

  Python · 6 个 star

• CHARLIE

  Circrnas in Host And viRuses anaLysis pIpEline for Detection Annotation Quantification of circRNAs

  Python · 4 个 star

• CCBR_NextflowTemplate

  CCBR template for Nextflow workflows

  Nextflow · 4 个 star

• CARLISLE

  Cut And Run anaLysIS pipeLinE calls peaks using MACS2, SEACR and GoPeaks on spike-in normalized input fastqs.

  Python · 4 个 star

• CCBR_SnakemakeTemplate

  Barebones framework for creating new snakemake workflows.

  Shell · 3 个 star

• LOGAN

  whoLe genOme-sequencinG Analysis pipeliNe

  Nextflow · 3 个 star

• SINCLAIR

  SINgle CelL AnalysIs Resource

  R · 3 个 star

• ccbr1271_ERVpipeline

  ERV pipeline based of scripts from NCI Yasmine Belkaid Lab

  Python · 2 个 star

• MOSuite

  Multi-OmicsSuite: R package for differential multi-omics analysis

  R · 2 个 star

• CHAMPAGNE

  CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline

  Nextflow · 2 个 star

• SCOT

  Single Cell Omics Toolbox

  R · 1 个 star

• CCBR_tobias

  Tobias implementation for ATAC seq data.

  Python · 1 个 star

• ASPEN

  CCBR pipeline for preliminary QC, peak calling, differential chromatin accessibility analysis with ATACseq datasets 🌲

  Python · 1 个 star

• Tools

  Utilities for CCBR Bioinformatics Software 🛠️

  Python · 1 个 star

• ASCENT

  rMATs and IsoformSwitchAnalyeR workflow for multi-group multi-contrasts scenarios

  Python · 0 个 star

• spacesavers2

  Python · 0 个 star

• nf-sandbox

  a repo for testing and toying with nextflow & gh actions

  Python · 0 个 star

• shiny-example

  An example shiny app that provides a template for creating and publishing apps internally to NCI or publicly outside of NCI.

  R · 0 个 star

• 还有 14 个仓库在 在 GitHub 查看