bioconda

Issues somebody may already be working on are listed last. List everything by date

• souporcell: add linux-aarch64 build

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  bioconda/bioconda-recipes#70342 · Opened Oct 15, 2026

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• homer 5.1: compiled tools carry an RPATH into the build env, so they fail to load libstdc++ (and HOMER exits 0 with empty results)

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  Difficulty 3/5 1-2 days Newbie friendliness 55/100

  bioconda/bioconda-recipes#70249 · Opened Oct 13, 2026

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• macs2 2.2.9.1 linux-64 builds _2 through _5 reference __log_finite/__exp_finite and fail to import on glibc >= 2.31 (incl. the biocontainers image)

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  Difficulty 4/5 1-2 days Newbie friendliness 48/100

  bioconda/bioconda-recipes#70217 · Opened Oct 13, 2026

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• humann 3.9 (noarch) ships its own x86-64 diamond 2.0.15 and bowtie2 2.2.3 in bin/, overwriting its declared run deps

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  Difficulty 3/5 1-2 days Newbie friendliness 72/100

  bioconda/bioconda-recipes#70213 · Opened Oct 13, 2026

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• [update] ensembl-vep 116.2 -> 116.3

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  Difficulty 2/5 1-3 hours Newbie friendliness 69/100

  bioconda/bioconda-recipes#70187 · Opened Oct 12, 2026

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• [update] mrbayes 3.2.8 -> 3.2.9

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  Difficulty 3/5 1-2 days Newbie friendliness 67/100

  bioconda/bioconda-recipes#70186 · Opened Oct 12, 2026

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• [update] bioconductor-methylkit 1.36.0 -> 1.38.0

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  Difficulty 2/5 1-3 hours Newbie friendliness 68/100

  bioconda/bioconda-recipes#70185 · Opened Oct 12, 2026

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• [update] bioconductor-geneselectmmd 2.54.0 -> 2.56.0

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  Difficulty 2/5 1-3 hours Newbie friendliness 67/100

  bioconda/bioconda-recipes#70184 · Opened Oct 12, 2026

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• [update] gatk4 4.6.2.0 -> 4.7.0.0

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  Difficulty 3/5 1-2 days Newbie friendliness 57/100

  bioconda/bioconda-recipes#70183 · 1 comment · Opened Oct 12, 2026

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• [update] bioconductor-biovizbase 1.58.0 -> 1.60.0

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  Difficulty 2/5 1-3 hours Newbie friendliness 62/100

  bioconda/bioconda-recipes#70182 · Opened Oct 12, 2026

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• ucsc-blat 482 (osx-arm64): blat has an invalid code signature and is killed at launch (exit 137)

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  Difficulty 2/5 1-3 hours Newbie friendliness 78/100

  bioconda/bioconda-recipes#70167 · Opened Oct 11, 2026

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• r-saige 1.3.1: SAIGE.so needs the removed tbb::task API, so library(SAIGE) fails on linux-64 and linux-aarch64

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  Difficulty 4/5 3-5 days Newbie friendliness 48/100

  bioconda/bioconda-recipes#70035 · Opened Oct 8, 2026

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• Six packages ship x86-64 binaries under linux-aarch64 or noarch; nothing lints ELF arch against subdir

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  Difficulty 4/5 3-5 days Newbie friendliness 38/100

  bioconda/bioconda-recipes#69811 · 3 comments · Opened Oct 2, 2026

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• [broken package] Seqfu has non working versions

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  Difficulty 3/5 Half a day Newbie friendliness 52/100

  bioconda/bioconda-recipes#69758 · Opened Sep 30, 2026

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• package bioconductor-depmap cannot be installed in prefix with spaces

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  Difficulty 3/5 Half a day Newbie friendliness 62/100

  bioconda/bioconda-recipes#69522 · Opened Sep 22, 2026

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• Generating PDF report with MAGeCK does not work anymore

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  Difficulty 4/5 3-5 days Newbie friendliness 42/100

  bioconda/bioconda-recipes#69499 · Opened Sep 22, 2026

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• repaq xz dependency

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  Difficulty 3/5 1-2 days Newbie friendliness 38/100

  bioconda/bioconda-recipes#69342 · Opened Sep 17, 2026

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• gnuplot-py 1.8 py3 build ships partially converted code (2to3 aborts silently)

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  Difficulty 4/5 3-5 days Newbie friendliness 48/100

  bioconda/bioconda-recipes#68921 · Opened Sep 8, 2026

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• pycoqc: h5py=2.9.0 pin is the only thing blocking linux-aarch64

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  Difficulty 1/5 Under an hour Newbie friendliness 72/100

  bioconda/bioconda-recipes#68793 · 2 comments · Opened Sep 3, 2026

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• gtdbtk and comebin pin pplacer =1.1.alpha19, the one version without linux-aarch64

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  Difficulty 3/5 Half a day Newbie friendliness 52/100

  bioconda/bioconda-recipes#68792 · 1 comment · Opened Sep 3, 2026

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• gatk4: multi-output split dropped noarch, so gatk4-main/gatk4-spark have no arm64 build

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  Difficulty 2/5 1-3 hours Newbie friendliness 72/100

  bioconda/bioconda-recipes#68791 · Opened Sep 3, 2026

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• metamdbg: additional-platforms block removed in 1.3, dropping linux-aarch64 and osx-arm64

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  Difficulty 1/5 Under an hour Newbie friendliness 88/100

  bioconda/bioconda-recipes#68790 · Opened Sep 3, 2026

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• Recipe updates that change source URL to a fork

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  question

  Difficulty 5/5 Over a week Newbie friendliness 22/100

  bioconda/bioconda-recipes#68715 · Opened Sep 2, 2026

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• Conda-forge migration or dual-channel guidance for dotmatch

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  Difficulty 5/5 Over a week Newbie friendliness 22/100

  bioconda/bioconda-recipes#68387 · 3 comments · Opened Aug 22, 2026

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• Bulk update Bioconductor recipes to Bioconductor 3.23 / R 4.6

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  Difficulty 5/5 Over a week Newbie friendliness 18/100

  bioconda/bioconda-recipes#68225 · 2 comments · 1 reaction · Opened Aug 17, 2026

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• [broken package] All native osx-arm64 megahit=1.2.9 builds are broken (AttributeError & Exit -11)

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  Difficulty 3/5 Half a day Newbie friendliness 48/100

  bioconda/bioconda-recipes#68074 · Opened Aug 11, 2026

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• [broken package] Multiple osx-64 megahit=1.2.9 builds fail test suite (Exit -6, Exit -11, AttributeError)

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  Difficulty 4/5 1-2 days Newbie friendliness 38/100

  bioconda/bioconda-recipes#68073 · 1 comment · Opened Aug 11, 2026

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• Suspicious number of downloads for Harpy

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  Difficulty 5/5 Over a week Newbie friendliness 22/100

  bioconda/bioconda-recipes#68071 · Opened Aug 11, 2026

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• Bioconda: hmftools wrappers force an unavailable locale

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  Difficulty 3/5 Half a day Newbie friendliness 68/100

  bioconda/bioconda-recipes#67947 · Opened Aug 7, 2026

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• Pause auto merging of autobumps with proposed changes

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  bioconda/bioconda-recipes#67365 · 1 comment · 2 reactions · Opened Jul 21, 2026

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• gatk4 openjdk>=17.0 dependency

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  Difficulty 2/5 1-3 hours Newbie friendliness 55/100

  bioconda/bioconda-recipes#66708 · 3 comments · Opened Jun 26, 2026

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• pygenomeviz 0.4.4 fails to install.

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  bioconda/bioconda-recipes#65137 · 2 comments · Opened May 6, 2026

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• ont-modkit 0.6.2 package contains 0.6.1 binary

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  Difficulty 2/5 1-3 hours Newbie friendliness 54/100

  bioconda/bioconda-recipes#65105 · 1 comment · 1 reaction · Opened May 5, 2026

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• sra-human-scrubber includes x86 binary, and isn't really no-arch

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  bioconda/bioconda-recipes#65077 · 1 comment · Opened May 4, 2026

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• Add Ne2-1L binary on PATH of r-rldne package

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  Difficulty 2/5 1-3 hours Newbie friendliness 48/100

  bioconda/bioconda-recipes#65040 · Opened May 2, 2026

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• admixture website has moved, including download link in build script

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  Difficulty 2/5 1-3 hours Newbie friendliness 50/100

  bioconda/bioconda-recipes#64982 · Opened Apr 30, 2026

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• install new Rust stable and nightly

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  Difficulty 3/5 1-2 days Newbie friendliness 45/100

  bioconda/bioconda-recipes#63328 · 1 comment · Opened Mar 7, 2026

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• Prevent accidentally pushing tags

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  Difficulty 4/5 3-5 days Newbie friendliness 18/100

  bioconda/bioconda-utils#1078 · Opened Feb 11, 2026

• Request to mark versions 1.2, 1.5, 1.7 of VITAP as broken

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  Difficulty 2/5 1-3 hours Newbie friendliness 35/100

  bioconda/bioconda-recipes#62412 · Opened Feb 5, 2026

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• Flagging duplicate pull requests for the same recipe

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  Difficulty 4/5 3-5 days Newbie friendliness 30/100

  bioconda/bioconda-recipes#61357 · 1 reaction · Opened Dec 15, 2025

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• `ensembl-vep` segmentation fault with macOS arm64

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  Difficulty 4/5 3-5 days Newbie friendliness 42/100

  bioconda/bioconda-recipes#61335 · 3 comments · 1 reaction · Opened Dec 13, 2025

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• gatk4 has a pin on python 3.10 that doesn't exist in meta.yml

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  Difficulty 2/5 1-3 hours Newbie friendliness 35/100

  bioconda/bioconda-recipes#61213 · 2 comments · Opened Dec 9, 2025

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• centos-7 test workflow for nvidia compiler

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  Difficulty 5/5 Over a week Newbie friendliness 20/100

  bioconda/bioconda-recipes#61168 · Opened Dec 6, 2025

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• Package roary is not installable if channel policy is strict

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  bioconda/bioconda-recipes#61150 · 2 comments · Opened Dec 5, 2025

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• illumina-interop version

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  Difficulty 3/5 1-2 days Newbie friendliness 45/100

  bioconda/bioconda-recipes#61064 · Opened Dec 3, 2025

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• samtools is not picking up AWS profiles for reading from S3.

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  bioconda/bioconda-recipes#60985 · Opened Nov 28, 2025

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• Automatically closing issues / PRs due to inactivity?

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  Difficulty 5/5 Over a week Newbie friendliness 20/100

  bioconda/bioconda-utils#1069 · Opened Nov 25, 2025

• mamba search output doesn't match website for old versions of bioconductor-biobase

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  Difficulty 4/5 3-5 days Newbie friendliness 25/100

  bioconda/bioconda-recipes#60630 · 1 comment · Opened Nov 11, 2025

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• macos-13 github runner deprecation and ARM variants

  May be free again @aliciaaevans claimed this 346 days ago, and no pull request is open. Open

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  bioconda/bioconda-recipes#60476 · 5 comments · 1 assignee · Opened Nov 4, 2025

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• Why doesn't installBiocDataPackage.sh support caching?

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  Difficulty 4/5 3-5 days Newbie friendliness 29/100

  bioconda/bioconda-recipes#60369 · 3 comments · Opened Oct 30, 2025

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