AllenCell/tfe-data

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example scripts and utilities for preparing data for the time series colorizer app

Stars: 4
Forks: 1
Open beginner issues: 1
Indexed issues: 19
Avg merge: 3d 11h
Merged PRs (30d): 5

Dominant language: Python
License: No license data
Last GitHub push: Sep 19, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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Load files from parent folders in `tfe-open` Open

internals new feature

Difficulty 5/5 Over a week Newbie friendliness 35/100

AllenCell/tfe-data#110 · 3 comments · Opened Sep 1, 2026
Error when calculating feature min/max Open

bug

AllenCell/tfe-data#108 · 1 comment · 1 assignee · Opened Mar 6, 2026
Inconsistency between 2D/3D centroid handling Open

bug

Difficulty 5/5 Over a week Newbie friendliness 25/100

AllenCell/tfe-data#107 · 1 comment · Opened Feb 13, 2026
Add warning about dataset sharing when running `tfe-open`. Open

new feature

Difficulty 2/5 1-3 hours Newbie friendliness 62/100

AllenCell/tfe-data#106 · Opened Jan 28, 2026
Graph data spec for lineages Open

new feature question

Difficulty 5/5 Over a week Newbie friendliness 25/100

AllenCell/tfe-data#105 · 1 comment · Opened Nov 27, 2025
Specify a release number when running `tfe-open` Open

new feature

Difficulty 4/5 3-5 days Newbie friendliness 48/100

AllenCell/tfe-data#104 · Opened Nov 25, 2025
Use shutdown signals in `tfe-open` Open

new feature

Difficulty 3/5 1-2 days Newbie friendliness 35/100

AllenCell/tfe-data#103 · Opened Nov 24, 2025
Auto-generate docs Open

documentation

Difficulty 5/5 Over a week Newbie friendliness 25/100

AllenCell/tfe-data#94 · 1 comment · Opened Sep 12, 2025
Allow bounding box data to be passed in instead of calculated automatically Open

new feature

Difficulty 4/5 3-5 days Newbie friendliness 38/100

AllenCell/tfe-data#79 · Opened Feb 6, 2025
Skip backdrop copy step when files already exist Open

new feature

Difficulty 3/5 1-2 days Newbie friendliness 45/100

AllenCell/tfe-data#71 · Opened Dec 4, 2024
Handle skipped frames in `converter.py` Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 45/100

AllenCell/tfe-data#69 · Opened Dec 3, 2024
Add description field to backdrops Open

new feature

Difficulty 3/5 1-2 days Newbie friendliness 45/100

AllenCell/tfe-data#68 · Opened Dec 3, 2024
Converter API logging does not show frame progress Open

bug

Difficulty 3/5 1-2 days Newbie friendliness 35/100

AllenCell/tfe-data#67 · Opened Dec 2, 2024
Automated linting/formatting tests Open

internals new feature

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

AllenCell/tfe-data#64 · 1 comment · Opened Nov 25, 2024
Idea: UI for converting datasets Open

dataset-management needs-detail new feature Potential Milestone

Difficulty 5/5 Over a week Newbie friendliness 20/100

AllenCell/tfe-data#58 · 3 comments · Opened Aug 21, 2024
Publish to PyPi Open

internals new feature

Difficulty 4/5 3-5 days Newbie friendliness 28/100

AllenCell/tfe-data#45 · 1 comment · Opened Apr 10, 2024
add conversion utility for TrackMate data Open

dataset-management new feature Potential Milestone

Difficulty 5/5 Over a week Newbie friendliness 25/100

AllenCell/tfe-data#40 · 1 comment · Opened Mar 20, 2024
Downsampling for background images Open

new feature

Difficulty 5/5 Over a week Newbie friendliness 20/100

AllenCell/tfe-data#27 · 1 comment · Opened Feb 15, 2024
Keep original segmentation filename when exporting frames? Open

new feature

Difficulty 3/5 1-2 days Newbie friendliness 38/100

AllenCell/tfe-data#24 · Opened Feb 14, 2024

AllenCell/tfe-data

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