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add conversion utility for TrackMate data

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#40 1 comment 0 reactions 0 assignees View on GitHub

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Assessment

Difficulty
5/5
Estimated time
Over a week
Newbie friendliness
25/100
Issue type
Feature
Clarity
Needs clarification
Activity status
Stale
Tech stack
python
Domain
data

Research direction

No repository file, test, or entry point is named. Start by reviewing the existing example scripts and utilities, then inspect the linked TrackMate resources to determine the input and output formats; done means a documented conversion utility is available for the first release.

Written by the indexing model from the issue text.

Description

dataset-management new feature Potential Milestone

Trackmate is a Fiji/ImageJ plugin that computes tracking for segmented data.
This is a widely used tool and we would do well if we could provide a conversion utility for our first release.

http://bioimageanalysis.org/track/
https://imagej.net/plugins/trackmate/trackers/accuracy
http://celltrackingchallenge.net/

https://www.nature.com/articles/nmeth.4473

Dominant language
Python
Stars
4
Forks
1
Avg merge
1d 17h
Merged PRs (30d)
6

Getting set up

  • No Dockerfile or Docker Compose file
  • Has a pull request template
  • No contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

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