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Last commit Dec 6, 2025

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Last commit Mar 22, 2017

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Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

Last commit May 13, 2020

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Last commit Sep 16, 2020

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Collection of helper scripts for common bioinformatics tasks

Last commit Sep 9, 2012

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Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Last commit Feb 1, 2020

(2 stars) (1 fork) (0 indexed issues) (0 open good first issues)

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

Last commit Apr 1, 2016

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Viral genomics toolkit for pandemics

Last commit Jun 16, 2021

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:bangbang: Rapid core genome SNP alignments from multiple bacterial genomes

Last commit Mar 26, 2023

(7 stars) (2 forks) (0 indexed issues) (0 open good first issues)

Duplicate FASTQ reads to address undersequenced regions

Last commit Apr 28, 2018

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🚦🍖Identify bacterial signal peptides

Last commit Jan 26, 2026

(3 stars) (1 fork) (0 indexed issues) (0 open good first issues)

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