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tseemann repositories

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tseemann/abricatePerl

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

Last commit Apr 3, 2026

 (496 stars) (105 forks) (1 indexed issue) (1 open good first issue)
tseemann/amplikatePerl

📢🎯 Generic typing tool from amplicons and/or in silico PCR

Last commit Oct 16, 2019

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/angusR

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

Last commit Aug 20, 2015

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/anthrakks

Distinguish Bacillus cereus and biovar anthracis (anthrax)

Last commit Sep 2, 2021

 (3 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/any2fastaPerl

Convert various sequence formats to FASTA

Last commit Dec 30, 2025

 (148 stars) (18 forks) (0 indexed issues) (0 open good first issues)
tseemann/apcPerl

(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join

Last commit Apr 8, 2015

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/arborkart

Phylogenomic trees with maps for the web

Last commit Mar 27, 2020

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

Last commit Mar 24, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/asmngs18

ASMNGS18 - 2018 Conference Details

Last commit Sep 22, 2018

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/assembillShell

Simple script to clip, assemble, tile and annotate a bacterial genome from Illumina reads

Last commit Aug 19, 2014

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/atlasPython

atlas

Last commit Mar 9, 2017

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/austrakka-public-siteTypeScript

Last commit Jun 13, 2025

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/babykraken

👶🦑 Very small Kraken2 database for bundling with pipelines

Last commit Aug 19, 2019

 (4 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/barrnapPerl

:microscope: :leo: Microbial RNA annotation

Last commit Apr 12, 2026

 (296 stars) (46 forks) (0 indexed issues) (0 open good first issues)
tseemann/berokkaPerl

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

Last commit Sep 7, 2019

 (27 stars) (3 forks) (0 indexed issues) (0 open good first issues)
tseemann/bioconda-recipesShell

Conda recipes for the bioconda channel.

Last commit May 1, 2026

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/bioinfo-scriptsPerl

Collection of bioinformatics utility scripts, mostly written in Bioperl

Last commit Aug 12, 2017

 (3 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/bng-toolsPerl

Useful post-processing scripts for BRATNextGen output data

Last commit Aug 7, 2014

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/bowkaster

cgMLST from FASTQ reads

Last commit Apr 26, 2018

 (4 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/bwaC

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

Last commit Apr 28, 2016

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)