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tseemann repositories

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tseemann/canuC++

A single molecule sequence assembler for genomes large and small.

Last commit Nov 6, 2019

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/cdhitPerl

Automatically exported from code.google.com/p/cdhit

Last commit Mar 26, 2019

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/cfml-maskrcPython

Masks recombinant regions in an alignment based on ClonalFrameML output

Last commit Jul 22, 2016

 (1 star) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/cgmlst-distsC

🐻⇔🐨 Calculate distance matrix from ChewBBACA cgMLST allele call tables

Last commit Feb 12, 2026

 (29 stars) (8 forks) (0 indexed issues) (0 open good first issues)
tseemann/coginator

Assign COGs to protein sequences

Last commit Apr 29, 2015

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/cortexC

reference free variant assembly

Last commit Feb 22, 2018

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/dehomopolymerateC

Collapse sequence homopolymers to a single character

Last commit Feb 7, 2026

 (4 stars) (2 forks) (0 indexed issues) (0 open good first issues)
tseemann/easy-web-blast

Last commit Jan 10, 2013

 (2 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/ekidnaPerl

Assembly based core genome SNP alignments for bacteria

Last commit Oct 23, 2019

 (25 stars) (3 forks) (0 indexed issues) (0 open good first issues)
tseemann/fasterqcPerl

A non-Java alternative to the classic FastQC tool

Last commit Jun 14, 2018

 (5 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/freebayesC++

Bayesian haplotype-based polymorphism discovery and genotyping.

Last commit Mar 11, 2015

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/galaxy_wrappersHTML

Repo for my galaxy wrappers and associated packages

Last commit Jun 4, 2016

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/gard

🍆 💊 Gonococcal Antimicrobial Resistance Detection

Last commit Feb 21, 2017

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/gatherseqPerl

Orgamize your folders of WGS files

Last commit Nov 22, 2025

 (4 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/gbk2bcfgff

Convert Genbank to GFF compatible with "bcftools csq"

Last commit Apr 8, 2023

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/govaluateGo

Arbitrary expression evaluation for golang

Last commit Oct 22, 2017

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/heterik

Estimate heterozygosity or mixture level of a bacterial WGS sample

Last commit Mar 23, 2021

 (3 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/homebrew-bioRuby

:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers

Last commit Aug 27, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/homebrew-bioinformatics-linuxRuby

:beer: :penguin: Homebrew formulae for bioinformatics software only available for Linux

Last commit Aug 23, 2019

 (27 stars) (7 forks) (0 indexed issues) (0 open good first issues)
tseemann/homebrew-coreRuby

🍻 Default formulae for the missing package manager for macOS

Last commit Apr 2, 2020

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)