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tseemann/.github

Summary of the torstyverse bioinformatics softwate suite

Last commit Feb 8, 2026

 (5 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/2013-caltech-workshopPython

Last commit Oct 31, 2013

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/ClonalFrameMLC++

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

Last commit Aug 27, 2019

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/FriPanJavaScript

Interactive, web tool for exploring pan-genome of bacterial strains

Last commit Mar 21, 2017

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tseemann/GraphAlignerC++

Last commit Oct 7, 2019

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/MUMmer3C++

MUMmer3

Last commit Apr 30, 2013

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tseemann/MapCallerC

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes

Last commit Feb 16, 2020

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/MashC++

Fast genome and metagenome distance estimation using MinHash

Last commit Oct 18, 2019

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tseemann/PEARC

Pair-End AssembeR

Last commit Apr 16, 2014

 (35 stars) (44 forks) (0 indexed issues) (0 open good first issues)
tseemann/PEATC++

An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.

Last commit Mar 4, 2015

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/PIRATEPerl

A toolbox for pangenome analysis and threshold evaluation.

Last commit Sep 30, 2019

 (2 stars) (2 forks) (0 indexed issues) (0 open good first issues)
tseemann/ProdigalC

Prodigal Gene Prediction Software

Last commit Feb 18, 2015

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/RoaryPerl

Rapid large-scale prokaryote pan genome analysis

Last commit Nov 1, 2019

 (3 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/SeqSeroPython

Salmonella serotyping from genome sequencing data

Last commit Sep 3, 2018

 (1 star) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/SpartanBioinformaticsHTML

Last commit May 27, 2019

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/TBProfilerPython

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

Last commit Mar 5, 2020

 (2 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/TOASTShell

The Other Alternative Sequence Type

Last commit Feb 27, 2026

 (1 star) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/TZMDPerl

Last commit Oct 10, 2018

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
tseemann/UnicyclerC++

hybrid assembly pipeline for bacterial genomes

Last commit Oct 21, 2019

 (0 stars) (1 fork) (0 indexed issues) (0 open good first issues)
tseemann/VelvetOptimiserPerl

:chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.

Last commit Dec 21, 2017

 (50 stars) (17 forks) (0 indexed issues) (0 open good first issues)