Invalid "selection" values in "read_zarr()" should raise an error
Nobody has claimed this yet.
Assessment
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Newbie friendliness
- 78/100
Research direction
Start at the spatialdata.read_zarr() entry point and inspect how the selection argument is handled. Validate entries against images, labels, points, shapes, and tables, and confirm that an unknown value such as "table" raises a clear ValueError instead of silently omitting data.
Written by the indexing model from the issue text.
Description
spatialdata.read_zarr() currently appears to silently ignore invalid values passed to selection.
For example:
sdata = spatialdata.read_zarr(
path,
selection=("table",),
)
returns a SpatialData object with no loaded tables instead of indicating that "table" is not a valid selector.
It would be safer if read_zarr() validated selection against the supported values:
{"images", "labels", "points", "shapes", "tables"}
and raised a clear ValueError for unknown entries. Silent failure can otherwise make a valid Zarr store look empty and is difficult to diagnose.
- Dominant language
- Python
- Stars
- 394
- Forks
- 95
- Avg merge
- 3d 9h
- Merged PRs (30d)
- 5
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
More from scverse/spatialdata
-
Difficulty 2/5 1-3 hours Newbie friendliness 74/100
scverse/spatialdata#1256 ·
-
bug 🚨 element: labels 🏷️ method: aggregation 🔢 needs: triage priority: medium
Difficulty 2/5 1-3 hours Newbie friendliness 68/100
scverse/spatialdata#1249 ·
-
bug 🚨 element: images 🌌 element: labels 🏷️ needs: triage
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
scverse/spatialdata#1239 ·
-
bug 🚨 element: shapes ▲ models needs: triage priority: medium
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
scverse/spatialdata#1234 ·
-
bug 🚨 element: labels 🏷️ method: aggregation 🔢 needs: triage priority: medium
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
scverse/spatialdata#1230 ·
All issues in scverse/spatialdata
Similar issues
-
essnmx good first issue
Difficulty 1/5 Under an hour Newbie friendliness 95/100
-
[Feature] 奇物选择添加优先级 Open
Difficulty 2/5 1-3 hours Newbie friendliness 65/100
syfoud/Simulated_Scepter#174 ·
-
Difficulty 2/5 1-3 hours Newbie friendliness 75/100
Giskard-AI/giskard-oss#2840 · 1 comment ·
-
A claim comment carrying the issue number is silently declined while the workflow reports success Openarea: repo bug perceived difficulty: 2
Difficulty 2/5 1-3 hours Newbie friendliness 70/100
-
Difficulty 2/5 1-3 hours Newbie friendliness 75/100
yeti-platform/yeti#1380 ·