Hacktoberfest 2026: the issues maintainers tagged for October, open and beginner-friendly. Browse Hacktoberfest issues

Bug report: Incorrect drawing order of Isosurfaces with opacity

Open
#5,268 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Assessment

Difficulty
4/5
Estimated time
3-5 days
Newbie friendliness
38/100
Issue type
Bug
Clarity
Mostly clear
Activity status
Stale
Tech stack
python

Research direction

Start by running the provided Python reproduction in Chrome and compare the isosurface and volume rendering at opacity 0.99 versus 1. Investigate the rendering path for opaque and nearly opaque Isosurfaces, multisurfaces, and volume plots. Done means the supplied cases draw in the correct order without regressing fully opaque rendering.

Written by the indexing model from the issue text.

Description

bug P2
  • Reported by Łukasz as a post on the forum
  • Plotly version: 6.2.0
  • Python version: 3.11.13
  • Browser: chrome

Hi, i have found quite annoying bug which can be seen only when the isosurface components are opaque. I observed that it doesn’t only occur for multiple trace isosurfaces, but also single multisurface isosurfaces and volume plots.

Here is an example code how to replicate it:
(The fun part is that when you change the opacity from 0.99 to 1 the plot gets visualised properly.)

import plotly.graph_objects as go
import numpy as np
import nrrd
from skimage.transform import resize


volume = np.zeros((50, 50, 50))
volume[1:10, 5:45, 5:45] =1
volume[10:20, 5:45, 5:45] = 1.5
volume[20:30, 5:45, 5:45] = 2
volume[30:40, 5:45, 5:45] = 2.5
volume[40:49, 5:45, 5:45] = 3
Z, X, Y = np.mgrid[0:volume.shape[0]:1, 0:volume.shape[1]:1, 0:volume.shape[2]:1]


fig = go.Figure(data=[go.Isosurface(
    x=X.flatten(),
    y=Y.flatten(),
    z=Z.flatten(),
    opacity=0.99,
    value=np.where(volume == 1, 1, 0).flatten(),
    surface_fill=1,
    surface_count=1,
    colorscale=[[0, 'rgb(0,255,0)'], [1, 'rgb(0,255,0)']],
    caps=dict(x_show=False, y_show=False, z_show=False),
    #slices_z=dict(show=True, locations=list(range(volume.shape[0]))),
    ),
    go.Isosurface(
        x=X.flatten(),
        y=Y.flatten(),
        z=Z.flatten(),
        opacity=0.99,
        value=np.where(volume == 3, 1, 0).flatten(),
        surface_fill=1,
        surface_count=1,
        colorscale=[[0, 'rgb(255,0,0)'], [1, 'rgb(255,0,0)']],
        caps=dict(x_show=False, y_show=False, z_show=False),
        # slices_z=dict(show=True, locations=list(range(volume.shape[0]))),
    )])

The bug can be seen looking form under the plot:

Dominant language
Python
Stars
18.8k
Forks
2.8k
Avg merge
13h 41m
Merged PRs (30d)
21

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

More from plotly/plotly.py

All issues in plotly/plotly.py

Similar issues

More Python issues

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.