nf-core/pairgenomealign
Pairwise genome comparison pipeline using the LAST software to align a list of query genomes to a target genome, and plot the results
Is nf-core/pairgenomealign beginner-friendly?
We have not seen enough recent pull requests from outside contributors to nf-core/pairgenomealign to say how often they are merged. 2 beginner-friendly issues are open now.
- Stars
- 11
- Forks
- 6
- Open beginner issues
- 2
- Indexed issues
- 18
- Avg merge
- 7h 49m
- Merged PRs (30d)
- 4
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Oct 8, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- No beginner labels indexed
How to contribute to nf-core/pairgenomealign
- Read the contributing guide first: it says how the maintainers want changes proposed, tested and reviewed.
- The project ships a dev container: open it in Codespaces to get a working environment in your browser.
- Read its code of conduct: it covers issues and pull requests as well as chat.
- Pick one of the 2 open beginner-friendly issues below and comment that you want to work on it before you start.
Issues somebody may already be working on are listed last. List everything by date
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 58/100
nf-core/pairgenomealign#168 ·
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documentation
Difficulty 1/5 1-3 hours Newbie friendliness 83/100
nf-core/pairgenomealign#167 ·
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documentation
Difficulty 1/5 1-3 hours Newbie friendliness 88/100
nf-core/pairgenomealign#166 ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 75/100
nf-core/pairgenomealign#162 ·
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bug
Difficulty 2/5 1-3 hours Newbie friendliness 82/100
nf-core/pairgenomealign#161 ·
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bug
Difficulty 1/5 Under an hour Newbie friendliness 88/100
nf-core/pairgenomealign#155 ·
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bug
Difficulty 3/5 1-2 days Newbie friendliness 35/100
nf-core/pairgenomealign#153 ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 58/100
nf-core/pairgenomealign#152 ·
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enhancement
Difficulty 2/5 1-3 hours Newbie friendliness 58/100
nf-core/pairgenomealign#146 ·
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`--targetName` modeOpenenhancement
Difficulty 3/5 1-2 days Newbie friendliness 55/100
nf-core/pairgenomealign#137 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 30/100
nf-core/pairgenomealign#132 ·
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Read alignment modeOpenenhancement
Difficulty 4/5 3-5 days Newbie friendliness 45/100
nf-core/pairgenomealign#131 ·
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enhancement
Difficulty 5/5 Over a week Newbie friendliness 35/100
nf-core/pairgenomealign#125 ·
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PAF exportMay be free again @charles-plessy claimed this 133 days ago, and no pull request is open. Openenhancement
nf-core/pairgenomealign#123 · 1 comment · 1 assignee ·
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bug
Difficulty 4/5 3-5 days Newbie friendliness 30/100
nf-core/pairgenomealign#103 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 45/100
nf-core/pairgenomealign#85 · 1 comment ·
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enhancement
Difficulty 4/5 3-5 days Newbie friendliness 45/100
nf-core/pairgenomealign#67 ·
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enhancement
Difficulty 3/5 1-2 days Newbie friendliness 45/100
nf-core/pairgenomealign#33 ·