`dandi upload <path>` reviews all local files before upload

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#1,676 2025年8月11日に作成コメント 9 件リアクション 0 件担当者 0 名 GitHub で見る

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評価

難易度: 3/5
見積もり時間: 1〜2日
初心者へのやさしさ: 42/100

issue の種類: バグ
明瞭さ: おおむね明確
活発さ: 停滞
技術スタック: python
領域: cli

調査の方向性

dandi upload コマンドのエントリポイントから始め、単一の .trk パスと --validation skip を使って報告された挙動を再現し、"Found 2 files to consider" ログと要求されたパスを比較します。無関係なローカルファイルとデータセットメタデータが調査される理由を追跡します。完了条件は、デフォルトの検出を変更せずに、特定のファイルパスが検証され、無関係なアセットを確認することなくアップロードされることです。

索引モデルが issue の本文から書いたものです。

説明

Hi @yarikoptic @CodyCBakerPhD,

Anastasia is trying to upload a single .trk file to lincbrain.org. She has local files (.jp2, .zarr, .png) that are on not in the Dandiset on lincbrain.org. Based on the logs it seems that the DANDI Client is going through all of those local files (to validate?) before uploading the .trk file.

However, based on the docs it seems that we should be able to pass a path to dandi upload ,and only validate and upload that file:

By default, all *.nwb, *.zarr, and *.ngff assets in the Dandiset (ignoring directories starting with a period) will be considered for the upload. You can point to specific files you would like to validate and have uploaded.

Below are the commands she has tried (among other variants):

Command 1

dandi upload -i linc sub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk

Command 2

DANDI_DEVEL=1 dandi upload -i linc --allow-any-path --validation skip derivatives/sub-MF278/dwi/sub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk

Head of the log file

2025-08-11T11:06:08-0400 [INFO    ] dandi 418040:22946905679424 python 3.13.5, dandi 0.69.3, dandischema 0.11.0, h5py 3.14.0, hdmf 4.1.0, pynwb 3.0.0, requests 2.32.4, urllib3 2.4.0
2025-08-11T11:06:08-0400 [INFO    ] dandi 418040:22946905679424 sys.argv = ['/space/aspasia/2/users/code/miniforge3/envs/dandi/bin/dandi', 'upload', '-i', 'linc', '--allow-any-path', '--validation', 'skip', 'derivatives/sub-MF278/dwi/sub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk']
2025-08-11T11:06:08-0400 [INFO    ] dandi 418040:22946905679424 os.getcwd() = /autofs/space/aspasia_002/users/linc/000003
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 Starting new HTTPS connection (1): rig.mit.edu:443
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Could not check dandi/dandi-cli for version updates: Connection to server could not be made
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 Starting new HTTPS connection (1): api.lincbrain.org:443
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/info/ HTTP/1.1" 200 358
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 GET https://api.lincbrain.org/api/info/
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 Starting new HTTPS connection (1): api.lincbrain.org:443
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/info/ HTTP/1.1" 200 358
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Response: 200
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Using api key from DANDI_API_KEY environment variable
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 GET https://api.lincbrain.org/api/auth/token
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/auth/token HTTP/1.1" 301 None
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/auth/token/ HTTP/1.1" 200 42
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Response: 200
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Found identifier DANDI:000003 in top level 'identifier'
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 7 to 5
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 5 to 7
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 7 to 5
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 5 to 7
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'zlib'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'gzip'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'bz2'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'lzma'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'blosc'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'zstd'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'lz4'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'astype'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'delta'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'quantize'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'fixedscaleoffset'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'packbits'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'categorize'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'pickle'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'base64'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'shuffle'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'bitround'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'crc32'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'adler32'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'jenkins_lookup3'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'json2'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'vlen-utf8'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'vlen-bytes'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'vlen-array'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'fletcher32'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'msgpack2'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'n5_wrapper'
2025-08-11T11:06:10-0400 [INFO    ] dandi 418040:22946905679424 Found 2 files to consider
2025-08-11T11:06:10-0400 [DEBUG   ] fscacher.cache 418040:22941210412800 Calling memoized version of <function get_digest at 0x14dd6afeef20> for /autofs/space/nyx_002/users/data/macaque/MF278/DSI/shelled_data/mrtrix/csdprob_dhollander_seed_label99_x39.5_y16.5_z35.trk
2025-08-11T11:06:10-0400 [DEBUG   ] dandi 418040:22941210412800 GET https://api.lincbrain.org/api/dandisets/000003/versions/draft/assets/
2025-08-11T11:06:11-0400 [DEBUG   ] urllib3.connectionpool 418040:22941210412800 https://api.lincbrain.org:443 "GET /api/dandisets/000003/versions/draft/assets/?path=derivatives%2Fsub-MF278%2Fdwi%2Fsub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk HTTP/1.1" 200 52
2025-08-11T11:06:11-0400 [DEBUG   ] dandi 418040:22941210412800 Response: 200
2025-08-11T11:06:11-0400 [WARNING ] bidsschematools 418040:22941210412800 No BIDS reference root provided.
2025-08-11T11:06:11-0400 [INFO    ] bidsschematools 418040:22941210412800 No schema path specified, defaulting to the bundled schema, `/autofs/space/aspasia_002/users/code/miniforge3/envs/dandi/lib/python3.13/site-packages/bidsschematools/data/schema.json`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>stimuli)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<stem>(?s:participants))(?P<extension>\.tsv|\.json)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/dataset_description.json`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/dataset_description.json`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s24mDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	*

Thank you.

cc @ayendiki @satra

note: extract from head of log with versions (might be outdated): python 3.13.5, dandi 0.69.3, dandischema 0.11.0, h5py 3.14.0, hdmf 4.1.0, pynwb 3.0.0, requests 2.32.4, urllib3 2.4.0

主要言語: Python
スター: 28
フォーク: 37
平均マージ: 1日 17時間
マージ済み PR（30日）: 11

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pynwb metadata: get neurodata types
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難易度 2/5 1〜3時間初心者へのやさしさ 65/100

dandi/dandi-cli#611 · 2021年5月4日に作成

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`metadata.nwb.get_metadata()` validates the whole BIDS dataset for every NWB file, then discards the result
対応中かも @CodyCBakerPhD が 15 日前に担当しました。オープン
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BIDS performance

dandi/dandi-cli#1962 · コメント 1 件 · 担当者 1 名 · 2026年10月13日に作成

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`bids_version` is always `None` since the switch to bids-validator-deno
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BIDS bug

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dandi/dandi-cli#1961 · コメント 4 件 · 2026年10月13日に作成

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Support NWB files stored as Zarr (`.nwb.zarr`)
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dandi/dandi-cli#1920 · コメント 2 件 · 2026年9月10日に作成

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Zarr depth limit rejects NWB chunk paths
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dandi/dandi-cli#1919 · 2026年9月10日に作成

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[BUG] OpenAI-compatible embedding model alias breaks embedder construction
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crewAIInc/crewAI#8761 · 2026年10月29日に作成

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[oblt-aw][autodoc] Document obs-aw-automerge contract and fix automerge doc inconsistencies
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難易度 2/5 1〜3時間初心者へのやさしさ 76/100

elastic/oblt-aw#2462 · 2026年10月29日に作成

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pr-merge: enable-auto-merge drops the verdict reader's babysit-listing-miss stderr
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admission-deferred priority: medium status: ready work-class: scoped

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melodic-software/claude-code-plugins#10887 · コメント 4 件 · 2026年10月29日に作成

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Fix deleting users who have saved settings
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backend bug good first issue

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PoCInnovation/Distribox#255 · 2026年10月29日に作成

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OpenAI provider sends max_tokens to gpt-5 and o-series models, which reject it
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難易度 2/5 1〜3時間初心者へのやさしさ 72/100

google/langextract#598 · 2026年10月29日に作成

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`dandi upload <path>` reviews all local files before upload

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