`dandi upload <path>` reviews all local files before upload

Abierto

#1,676 abierto el 11/8/2025 9 comentarios 0 reacciones 0 asignados Ver en GitHub

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Nadie ha tomado este issue todavía.

Evaluación

Dificultad: 3/5
Tiempo estimado: 1-2 días
Aptitud para principiantes: 42/100

Tipo de issue: Error
Claridad: Bastante claro
Estado de actividad: Estancado
Stack tecnológico: python
Área: cli

Línea de trabajo

Comienza en el punto de entrada del comando dandi upload y reproduce el comportamiento informado con la única ruta .trk y --validation skip, comparando el registro "Found 2 files to consider" con la ruta solicitada. Rastrea por qué se inspeccionan archivos locales no relacionados y los metadatos del dataset; se considera terminado cuando una ruta de archivo específica se valida y se sube sin revisar activos no relacionados, mientras el descubrimiento predeterminado permanece sin cambios.

Escrito por el modelo de indexación a partir del texto del issue.

Descripción

Hi @yarikoptic @CodyCBakerPhD,

Anastasia is trying to upload a single .trk file to lincbrain.org. She has local files (.jp2, .zarr, .png) that are on not in the Dandiset on lincbrain.org. Based on the logs it seems that the DANDI Client is going through all of those local files (to validate?) before uploading the .trk file.

However, based on the docs it seems that we should be able to pass a path to dandi upload ,and only validate and upload that file:

By default, all *.nwb, *.zarr, and *.ngff assets in the Dandiset (ignoring directories starting with a period) will be considered for the upload. You can point to specific files you would like to validate and have uploaded.

Below are the commands she has tried (among other variants):

Command 1

dandi upload -i linc sub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk

Command 2

DANDI_DEVEL=1 dandi upload -i linc --allow-any-path --validation skip derivatives/sub-MF278/dwi/sub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk

Head of the log file

2025-08-11T11:06:08-0400 [INFO    ] dandi 418040:22946905679424 python 3.13.5, dandi 0.69.3, dandischema 0.11.0, h5py 3.14.0, hdmf 4.1.0, pynwb 3.0.0, requests 2.32.4, urllib3 2.4.0
2025-08-11T11:06:08-0400 [INFO    ] dandi 418040:22946905679424 sys.argv = ['/space/aspasia/2/users/code/miniforge3/envs/dandi/bin/dandi', 'upload', '-i', 'linc', '--allow-any-path', '--validation', 'skip', 'derivatives/sub-MF278/dwi/sub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk']
2025-08-11T11:06:08-0400 [INFO    ] dandi 418040:22946905679424 os.getcwd() = /autofs/space/aspasia_002/users/linc/000003
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 Starting new HTTPS connection (1): rig.mit.edu:443
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Could not check dandi/dandi-cli for version updates: Connection to server could not be made
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 Starting new HTTPS connection (1): api.lincbrain.org:443
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/info/ HTTP/1.1" 200 358
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 GET https://api.lincbrain.org/api/info/
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 Starting new HTTPS connection (1): api.lincbrain.org:443
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/info/ HTTP/1.1" 200 358
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Response: 200
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Using api key from DANDI_API_KEY environment variable
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 GET https://api.lincbrain.org/api/auth/token
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/auth/token HTTP/1.1" 301 None
2025-08-11T11:06:08-0400 [DEBUG   ] urllib3.connectionpool 418040:22946905679424 https://api.lincbrain.org:443 "GET /api/auth/token/ HTTP/1.1" 200 42
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Response: 200
2025-08-11T11:06:08-0400 [DEBUG   ] dandi 418040:22946905679424 Found identifier DANDI:000003 in top level 'identifier'
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 7 to 5
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 5 to 7
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 7 to 5
2025-08-11T11:06:09-0400 [DEBUG   ] h5py._conv 418040:22946905679424 Creating converter from 5 to 7
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'zlib'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'gzip'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'bz2'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'lzma'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'blosc'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'zstd'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'lz4'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'astype'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'delta'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'quantize'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'fixedscaleoffset'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'packbits'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'categorize'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'pickle'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'base64'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'shuffle'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'bitround'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'crc32'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'adler32'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'jenkins_lookup3'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'json2'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'vlen-utf8'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'vlen-bytes'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'vlen-array'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'fletcher32'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'msgpack2'
2025-08-11T11:06:09-0400 [DEBUG   ] numcodecs 418040:22946905679424 Registering codec 'n5_wrapper'
2025-08-11T11:06:10-0400 [INFO    ] dandi 418040:22946905679424 Found 2 files to consider
2025-08-11T11:06:10-0400 [DEBUG   ] fscacher.cache 418040:22941210412800 Calling memoized version of <function get_digest at 0x14dd6afeef20> for /autofs/space/nyx_002/users/data/macaque/MF278/DSI/shelled_data/mrtrix/csdprob_dhollander_seed_label99_x39.5_y16.5_z35.trk
2025-08-11T11:06:10-0400 [DEBUG   ] dandi 418040:22941210412800 GET https://api.lincbrain.org/api/dandisets/000003/versions/draft/assets/
2025-08-11T11:06:11-0400 [DEBUG   ] urllib3.connectionpool 418040:22941210412800 https://api.lincbrain.org:443 "GET /api/dandisets/000003/versions/draft/assets/?path=derivatives%2Fsub-MF278%2Fdwi%2Fsub-MF278-sample-brain-desc-CSD-tractography-prob-dhollander-seed-label99-x39.5-y16.5-z35.trk HTTP/1.1" 200 52
2025-08-11T11:06:11-0400 [DEBUG   ] dandi 418040:22941210412800 Response: 200
2025-08-11T11:06:11-0400 [WARNING ] bidsschematools 418040:22941210412800 No BIDS reference root provided.
2025-08-11T11:06:11-0400 [INFO    ] bidsschematools 418040:22941210412800 No schema path specified, defaulting to the bundled schema, `/autofs/space/aspasia_002/users/code/miniforge3/envs/dandi/lib/python3.13/site-packages/bidsschematools/data/schema.json`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<path>stimuli)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/participants.tsv`, with pattern: `(?:.*/)?(?P<stem>(?s:participants))(?P<extension>\.tsv|\.json)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/dataset_description.json`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/dataset_description.json`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/README`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s25nDF.jp2`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s04nDF.jp2`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>dataset_description\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CITATION\.cff)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<stem>(?s:README))(?P<extension>|\.md|\.rst|\.txt)\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>CHANGES)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>LICENSE)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>genetic_info\.json)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>code)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>derivatives)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	* `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s27nDF.jp2`, with pattern: `(?:.*/)?(?P<path>sourcedata)(?:/.*)?\Z`
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Match identified.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Checking file `/autofs/space/aspasia_002/users/linc/000003/sourcedata/sub-MN115/micr/mn115LY_c21_s24mDF.jp2`.
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 Trying file types:
2025-08-11T11:06:13-0400 [DEBUG   ] bidsschematools 418040:22941210412800 	*

Thank you.

cc @ayendiki @satra

note: extract from head of log with versions (might be outdated): python 3.13.5, dandi 0.69.3, dandischema 0.11.0, h5py 3.14.0, hdmf 4.1.0, pynwb 3.0.0, requests 2.32.4, urllib3 2.4.0

Lenguaje dominante: Python
Estrellas: 28
Forks: 37
Merge medio: 1 d 17 h
PR fusionados (30 d): 11

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