blekhmanlab/compendium

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Stars: 9
Forks: 0
Open beginner issues: 0
Indexed issues: 13

Dominant language: Python
License: Apache-2.0
Last GitHub push: Aug 27, 2025
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

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13 open issues indexed

Specify branch for retrieving snakemake repository Open

enhancement

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

blekhmanlab/compendium#21 · Opened Aug 12, 2025
Accession list parsing does not accommodate EOF newline char Open

bug

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

blekhmanlab/compendium#20 · Opened Aug 6, 2025
Accommodate multiple taxa in database and workflow Open

enhancement

blekhmanlab/compendium#18 · 1 assignee · Opened Feb 12, 2025
Manager doesn't detect when pipeline errors crashed snakemake Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

blekhmanlab/compendium#14 · Opened Jan 17, 2023
Add ability to restart a failed project as single-end Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

blekhmanlab/compendium#13 · Opened Jan 13, 2023
Add ability to restart a failed project with `matchids` option Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

blekhmanlab/compendium#12 · Opened Jan 13, 2023
Automatic submission of projects miscounts restarted projects Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

blekhmanlab/compendium#11 · Opened Jan 12, 2023
When user requests project status, it should include info from DB Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

blekhmanlab/compendium#10 · Opened Jan 12, 2023
Checking status of re-run jobs overestimates progress Open

Difficulty 4/5 3-5 days Newbie friendliness 42/100

blekhmanlab/compendium#9 · Opened Jan 10, 2023
Restructure project Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

blekhmanlab/compendium#8 · Opened Jan 9, 2023
Pipeline stalls when prefetch can't reach a sample Open

Difficulty 5/5 Over a week Newbie friendliness 32/100

blekhmanlab/compendium#5 · 4 comments · Opened Jan 8, 2023
Add testing Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

blekhmanlab/compendium#4 · Opened Dec 21, 2022
Convert to CLI tool Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

blekhmanlab/compendium#1 · 1 comment · Opened Dec 20, 2022

blekhmanlab/compendium

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