blekhmanlab/MicroBioMap

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R package for fetching and parsing data of the Human Microbiome Compendium

Stars: 17
Forks: 3
Open beginner issues: 0
Indexed issues: 19

Dominant language: R
License: No license data
Last GitHub push: Jan 24, 2025
Latest indexed: Sep 14, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed
PR merge metrics: No merged PRs in 30d

Beginner friendly Everything

Open All

19 open issues indexed

Generate (and log) seed for rarefaction step Open

blekhmanlab/MicroBioMap#33 · 1 assignee · Opened May 5, 2026
Retrieve projection library from zenodo Open

blekhmanlab/MicroBioMap#31 · 1 comment · 1 assignee · Opened Apr 21, 2026
Add projection web app documentation Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 58/100

blekhmanlab/MicroBioMap#30 · Opened Apr 17, 2026
Document custom ordination process Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 68/100

blekhmanlab/MicroBioMap#29 · Opened Apr 17, 2026
Add projection recipes Open

documentation

blekhmanlab/MicroBioMap#27 · 1 assignee · Opened Apr 16, 2026
Add projection to vignette Open

documentation

Difficulty 2/5 Half a day Newbie friendliness 45/100

blekhmanlab/MicroBioMap#26 · 1 comment · Opened Apr 16, 2026
Prep release of projection code Open

blekhmanlab/MicroBioMap#25 · 1 assignee · Opened Apr 16, 2026
Examples of generating maps Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 42/100

blekhmanlab/MicroBioMap#28 · Opened Mar 17, 2026
Define ordinations from custom taxon weights Open

blekhmanlab/MicroBioMap#24 · 1 assignee · Opened Feb 19, 2026
Define ordinations from custom subset of compendium Open

blekhmanlab/MicroBioMap#23 · 1 assignee · Opened Feb 19, 2026
Project user data using pre-calculated ordinarions Open

blekhmanlab/MicroBioMap#22 · 2 comments · 1 assignee · Opened Feb 19, 2026
taxanomy information at strain level Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

blekhmanlab/MicroBioMap#16 · 6 comments · 1 reaction · Opened Feb 18, 2024
Clean up non-idiomatic code in vignette Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

blekhmanlab/MicroBioMap#14 · Opened Oct 21, 2023
Taxonomic levels Genus names at Family rank Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

blekhmanlab/MicroBioMap#13 · 1 comment · Opened Oct 16, 2023
Include "recipes" in vignette Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

blekhmanlab/MicroBioMap#12 · 1 comment · Opened Aug 29, 2023
Map organisms to Greengenes2 Open

blekhmanlab/MicroBioMap#10 · 1 assignee · Opened Aug 4, 2023
Provide link for studies in compendium in BugSigDB Open

blekhmanlab/MicroBioMap#9 · 1 comment · 1 assignee · Opened Aug 4, 2023
Co-occurrence visualization Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

blekhmanlab/MicroBioMap#7 · Opened Aug 1, 2023
Background text for pipeline Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

blekhmanlab/MicroBioMap#6 · Opened Aug 1, 2023

blekhmanlab/MicroBioMap

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