Document custom ordination process
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Assessment
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Newbie friendliness
- 68/100
- Issue type
- Documentation
- Clarity
- Mostly clear
- Activity status
- Quiet
- Tech stack
- r
- Domain
- bioinformatics, documentation
Research direction
Start by locating the existing rarefaction, family-level consolidation, and prcomp calls in the R package, then review any current examples or documentation. Add an example script showing the ordination workflow and the steps users may want to modify; done means the script is understandable and reproducible.
Written by the indexing model from the issue text.
Description
We have all the components (rarefaction, consolidation at family level, prcomp calls to get loadings, etc) needed to make a nice little helper function that does all the work, but those are also the steps that a user may want to do differently for their ordination. We don't have to come up with every possible parameter ahead of time for a helper function if we just provide an example script highlighting areas someone may want to tweak.
- Dominant language
- R
- Stars
- 17
- Forks
- 3
- PR merge metrics
- No merged PRs in 30d
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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