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Can't enter sample info for project 12604

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#558 3 comments 0 reactions 2 assignees View on GitHub

@charles-cowart is already working on this.

Since Aug 14, 2019.

Assessment

This issue has not been assessed yet.

Description

In Qiita we've selected for the tube id to be input into the platemap, and once the samples are pasted into the plate map (using tube id) in this error shows up:

Error
Error running SQL query: Query: SELECT sample_values->'tube_id' FROM qiita.sample_12604 as tube_id WHERE sample_id = %s Arguments: ['12604.MAD.1.17.268.01'] Error: permission denied for relation sample_12604

Traceback
Traceback (most recent call last):
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 586, in _execute cur.execute(sql, sql_args)
File "/home/labcontrol/miniconda3/envs/labcontrol2019.6.1/lib/python3.5/site-packages/psycopg2/extras.py", line 142, in execute return super(DictCursor, self).execute(query, vars)
psycopg2.errors.InsufficientPrivilege: permission denied for relation sample_12604
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/labcontrol/miniconda3/envs/labcontrol2019.6.1/lib/python3.5/site-packages/tornado/web.py", line 1590, in _execute result = method(*self.path_args, **self.path_kwargs)
File "/home/labcontrol/miniconda3/envs/labcontrol2019.6.1/lib/python3.5/site-packages/tornado/web.py", line 3006, in wrapper return method(self, *args, **kwargs)
File "/home/labcontrol/labcontrol/labman/labcontrol/gui/handlers/plate.py", line 267, in get self.write(json_encode(plate_layout_handler_get_request(plate_id)))
File "/home/labcontrol/labcontrol/labman/labcontrol/gui/handlers/plate.py", line 256, in plate_layout_handler_get_request sample = composition.specimen_id
File "/home/labcontrol/labcontrol/labman/labcontrol/db/composition.py", line 582, in specimen_id return study.sample_id_to_specimen_id(self.sample_id)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/study.py", line 177, in sample_id_to_specimen_id res = TRN.execute_fetchflatten()
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 391, in wrapper return func(self, *args, **kwargs)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 735, in execute_fetchflatten return list(chain.from_iterable(self.execute()[idx]))
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 391, in wrapper return func(self, *args, **kwargs)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 643, in execute return self._execute()
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 590, in _execute self._raise_execution_error(sql, sql_args, e)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 535, in _raise_execution_error % (sql, str(sql_args), str(error)))
ValueError: Error running SQL query: Query: SELECT sample_values->'tube_id' FROM qiita.sample_12604 as tube_id WHERE sample_id = %s Arguments: ['12604.MAD.1.17.268.01'] Error: permission denied for relation sample_12604

Request Info
uri: /plate/251/layout
host: labcontrol.ucsd.edu
body_arguments: {}
body: b''
headers: Cookie: _ga=GA1.2.515592774.1562178083; jlinkauthserver=findlay; __utmc=57960238; jlinkserver=act; jssoserver=findlay; _fbp=fb.1.1562618242476.53653934; user=2|1:0|10:1563385655|4:user|28:Imp0b3JvbmN6YWtAdWNzZC5lZHUi|6375bf15df215358c0f5a69dfb4dbb3b5e3b671beb149d0c2db5f2c87f4e4eb7; __utma=57960238.515592774.1562178083.1562682506.1563890447.3; __utmz=57960238.1563890447.3.3.utmcsr=a5.ucsd.edu|utmccn=(referral)|utmcmd=referral|utmcct=/tritON/profile/SAML2/Redirect/SSO; jlinksessionidx=z7790792b2ece3298735a8a3888893b37; xjlinkloginMyTimeEntry.User=REMOVE; jlinkappx=/marketplace-sso/signon; xjlinkloginStaff.InquiryA4=OK; jlinkpedjat=pedjat X-Real-Ip: 137.110.66.21 Accept-Encoding: identity Accept: / Accept-Language: en-US,en;q=0.9 Host: labcontrol.ucsd.edu X-Requested-With: XMLHttpRequest User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_13_6) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/75.0.3770.142 Safari/537.36 Connection: upgrade Referer: https://labcontrol.ucsd.edu/plate?process_id=309 X-Forwarded-For: 137.110.66.21
protocol: https
_finish_time: None
_cookies: Set-Cookie: __utma=57960238.515592774.1562178083.1562682506.1563890447.3 Set-Cookie: __utmc=57960238 Set-Cookie: __utmz="57960238.1563890447.3.3.utmcsr=a5.ucsd.edu|utmccn=(referral)|utmcmd=referral|utmcct=/tritON/profile/SAML2/Redirect/SSO" Set-Cookie: _fbp=fb.1.1562618242476.53653934 Set-Cookie: _ga=GA1.2.515592774.1562178083 Set-Cookie: jlinkappx="/marketplace-sso/signon" Set-Cookie: jlinkauthserver=findlay Set-Cookie: jlinkpedjat=pedjat Set-Cookie: jlinkserver=act Set-Cookie: jlinksessionidx=z7790792b2ece3298735a8a3888893b37 Set-Cookie: jssoserver=findlay Set-Cookie: user=2|1:0|10:1563385655|4:user|28:Imp0b3JvbmN6YWtAdWNzZC5lZHUi|6375bf15df215358c0f5a69dfb4dbb3b5e3b671beb149d0c2db5f2c87f4e4eb7 Set-Cookie: xjlinkloginMyTimeEntry.User=REMOVE Set-Cookie: xjlinkloginStaff.InquiryA4=OK
server_connection:
query_arguments: {}
version: HTTP/1.1
arguments: {}
method: GET
host_name: labcontrol.ucsd.edu
path: /plate/251/layout
connection:
files: {}
remote_ip: 127.0.0.1
_start_time: 1565102063.703464
query:

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