Hacktoberfest 2026:维护者为十月标记出来的 issue,仍然开放、适合新手。 浏览 Hacktoberfest issue

Can't enter sample info for project 12604

未关闭
#558 3 条评论 0 个 reaction 已指派 2 人 在 GitHub 查看

@charles-cowart 已经在做这个了。

开始于 2019年8月14日。

评估

这个 Issue 还没有评估数据。

描述

In Qiita we've selected for the tube id to be input into the platemap, and once the samples are pasted into the plate map (using tube id) in this error shows up:

Error
Error running SQL query: Query: SELECT sample_values->'tube_id' FROM qiita.sample_12604 as tube_id WHERE sample_id = %s Arguments: ['12604.MAD.1.17.268.01'] Error: permission denied for relation sample_12604

Traceback
Traceback (most recent call last):
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 586, in _execute cur.execute(sql, sql_args)
File "/home/labcontrol/miniconda3/envs/labcontrol2019.6.1/lib/python3.5/site-packages/psycopg2/extras.py", line 142, in execute return super(DictCursor, self).execute(query, vars)
psycopg2.errors.InsufficientPrivilege: permission denied for relation sample_12604
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/labcontrol/miniconda3/envs/labcontrol2019.6.1/lib/python3.5/site-packages/tornado/web.py", line 1590, in _execute result = method(*self.path_args, **self.path_kwargs)
File "/home/labcontrol/miniconda3/envs/labcontrol2019.6.1/lib/python3.5/site-packages/tornado/web.py", line 3006, in wrapper return method(self, *args, **kwargs)
File "/home/labcontrol/labcontrol/labman/labcontrol/gui/handlers/plate.py", line 267, in get self.write(json_encode(plate_layout_handler_get_request(plate_id)))
File "/home/labcontrol/labcontrol/labman/labcontrol/gui/handlers/plate.py", line 256, in plate_layout_handler_get_request sample = composition.specimen_id
File "/home/labcontrol/labcontrol/labman/labcontrol/db/composition.py", line 582, in specimen_id return study.sample_id_to_specimen_id(self.sample_id)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/study.py", line 177, in sample_id_to_specimen_id res = TRN.execute_fetchflatten()
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 391, in wrapper return func(self, *args, **kwargs)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 735, in execute_fetchflatten return list(chain.from_iterable(self.execute()[idx]))
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 391, in wrapper return func(self, *args, **kwargs)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 643, in execute return self._execute()
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 590, in _execute self._raise_execution_error(sql, sql_args, e)
File "/home/labcontrol/labcontrol/labman/labcontrol/db/sql_connection.py", line 535, in _raise_execution_error % (sql, str(sql_args), str(error)))
ValueError: Error running SQL query: Query: SELECT sample_values->'tube_id' FROM qiita.sample_12604 as tube_id WHERE sample_id = %s Arguments: ['12604.MAD.1.17.268.01'] Error: permission denied for relation sample_12604

Request Info
uri: /plate/251/layout
host: labcontrol.ucsd.edu
body_arguments: {}
body: b''
headers: Cookie: _ga=GA1.2.515592774.1562178083; jlinkauthserver=findlay; __utmc=57960238; jlinkserver=act; jssoserver=findlay; _fbp=fb.1.1562618242476.53653934; user=2|1:0|10:1563385655|4:user|28:Imp0b3JvbmN6YWtAdWNzZC5lZHUi|6375bf15df215358c0f5a69dfb4dbb3b5e3b671beb149d0c2db5f2c87f4e4eb7; __utma=57960238.515592774.1562178083.1562682506.1563890447.3; __utmz=57960238.1563890447.3.3.utmcsr=a5.ucsd.edu|utmccn=(referral)|utmcmd=referral|utmcct=/tritON/profile/SAML2/Redirect/SSO; jlinksessionidx=z7790792b2ece3298735a8a3888893b37; xjlinkloginMyTimeEntry.User=REMOVE; jlinkappx=/marketplace-sso/signon; xjlinkloginStaff.InquiryA4=OK; jlinkpedjat=pedjat X-Real-Ip: 137.110.66.21 Accept-Encoding: identity Accept: / Accept-Language: en-US,en;q=0.9 Host: labcontrol.ucsd.edu X-Requested-With: XMLHttpRequest User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_13_6) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/75.0.3770.142 Safari/537.36 Connection: upgrade Referer: https://labcontrol.ucsd.edu/plate?process_id=309 X-Forwarded-For: 137.110.66.21
protocol: https
_finish_time: None
_cookies: Set-Cookie: __utma=57960238.515592774.1562178083.1562682506.1563890447.3 Set-Cookie: __utmc=57960238 Set-Cookie: __utmz="57960238.1563890447.3.3.utmcsr=a5.ucsd.edu|utmccn=(referral)|utmcmd=referral|utmcct=/tritON/profile/SAML2/Redirect/SSO" Set-Cookie: _fbp=fb.1.1562618242476.53653934 Set-Cookie: _ga=GA1.2.515592774.1562178083 Set-Cookie: jlinkappx="/marketplace-sso/signon" Set-Cookie: jlinkauthserver=findlay Set-Cookie: jlinkpedjat=pedjat Set-Cookie: jlinkserver=act Set-Cookie: jlinksessionidx=z7790792b2ece3298735a8a3888893b37 Set-Cookie: jssoserver=findlay Set-Cookie: user=2|1:0|10:1563385655|4:user|28:Imp0b3JvbmN6YWtAdWNzZC5lZHUi|6375bf15df215358c0f5a69dfb4dbb3b5e3b671beb149d0c2db5f2c87f4e4eb7 Set-Cookie: xjlinkloginMyTimeEntry.User=REMOVE Set-Cookie: xjlinkloginStaff.InquiryA4=OK
server_connection:
query_arguments: {}
version: HTTP/1.1
arguments: {}
method: GET
host_name: labcontrol.ucsd.edu
path: /plate/251/layout
connection:
files: {}
remote_ip: 127.0.0.1
_start_time: 1565102063.703464
query:

主要语言
Python
星标
2
派生
15
PR 合并指标
30 天内没有已合并 PR

贡献指南

这个仓库没有索引到贡献指南

从这里开始

  1. 先读完整个 Issue,再读项目的贡献指南。
  2. 在 Issue 下留言说明你要接手 —— 这能避免两个人做同样的事。
  3. Fork 仓库,在一个分支上完成修改。
  4. 提交 Pull Request,并在描述里引用这个 Issue 编号。

biocore/LabControl 的其他 Issue

查看 biocore/LabControl 的全部 Issue

相似的 Issue

更多 Python Issue

把新 issue 发到你的邮箱

精选适合新手参与的 GitHub issue 摘要。