TheAxonLab Open Source Projects

Compute FC from the atlas projected on the surface Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

TheAxonLab/hcph-sops#531 · Opened Jun 3, 2025

Modify standard protocol schedule according last minute changes Open

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

TheAxonLab/hcph-sops#503 · Opened Sep 2, 2024

Mislabeled scanner rooms Open

Difficulty 1/5 Under an hour Newbie friendliness 75/100

TheAxonLab/hcph-sops#482 · Opened Aug 18, 2024

Set up EyeLink and PyEdfRead in 2024 Open

eye-tracking

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

TheAxonLab/hcph-sops#481 · 2 comments · Opened Jun 19, 2024

A snippet for directly writing the dataframe "recording" and metadata into BIDS format Open

eye-tracking

Difficulty 2/5 1-3 hours Newbie friendliness 38/100

TheAxonLab/hcph-sops#480 · 1 reaction · Opened Jun 19, 2024

Plot the ratings in relation to the IQMs or PCA components to see if there are clear patterns Open

TheAxonLab/hcph-sops#474 · 1 assignee · Opened Apr 30, 2024

[EDF to BIDS conversion] clean up obsolete commented lines of `eyetrackingrun.py` and make sure code snippets in `edf_to_bids.md` match `eyetrackingrun.py` Open

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

TheAxonLab/hcph-sops#458 · Opened Mar 26, 2024

[EDF to BIDS revision] Clarify extraction of validation information from eye-tracking data Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

TheAxonLab/hcph-sops#457 · Opened Mar 26, 2024

[EDF to BIDS revision] Unclear explanation about how to extract `Startime` and `Stoptime` metadata Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

TheAxonLab/hcph-sops#456 · 1 reaction · Opened Mar 26, 2024

[EDF to BIDS revision] Add code snippet about how to call the script for EDF to BIDS conversion Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 55/100

TheAxonLab/hcph-sops#455 · 2 reactions · Opened Mar 26, 2024

Define fMRIPrep output space Open

documentation QC criteria

Difficulty 3/5 1-2 days Newbie friendliness 35/100

TheAxonLab/hcph-sops#454 · Opened Mar 13, 2024

Define what means for susceptibility distortion to be large Open

documentation QC criteria

Difficulty 5/5 Over a week Newbie friendliness 25/100

TheAxonLab/hcph-sops#453 · Opened Mar 13, 2024

Add QC criteria for T2w anatomical Open

documentation QC criteria

Difficulty 3/5 1-2 days Newbie friendliness 30/100

TheAxonLab/hcph-sops#452 · Opened Mar 13, 2024

Modify FC to be computed from surfaces Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 35/100

TheAxonLab/hcph-sops#451 · Opened Mar 13, 2024

Write SOP for clinical acquisition Open

documentation

Difficulty 4/5 3-5 days Newbie friendliness 20/100

TheAxonLab/hcph-sops#450 · Opened Mar 11, 2024

Add SIMON dataset in Table 2 Open

manuscript

Difficulty 2/5 1-3 hours Newbie friendliness 40/100

TheAxonLab/hcph-sops#449 · Opened Mar 11, 2024

Add CNeuroMod dataset in Table 2 Open

manuscript

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

TheAxonLab/hcph-sops#448 · Opened Mar 11, 2024

[Manuscript] Adapt Table 3 and Table 4 as we will acquire multi-echo on the clinical scanner as well Open

manuscript

Difficulty 4/5 3-5 days Newbie friendliness 15/100

TheAxonLab/hcph-sops#447 · Opened Mar 11, 2024

Should we remove the "Extended reports shared across echos" section of the MRIQC report? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

TheAxonLab/hcph-sops#446 · Opened Mar 11, 2024

Exclusion criteria missing for T2* GM values of fMRIPrep visual report Open

QC criteria

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

TheAxonLab/hcph-sops#443 · Opened Feb 6, 2024

Exclusion criteria missing for T2* map of fMRIPrep visual report Open

QC criteria

Difficulty 3/5 1-2 days Newbie friendliness 30/100

TheAxonLab/hcph-sops#442 · Opened Feb 6, 2024

Exclusion criteria missing for anatomical conformation section of fMRIPrep visual report Open

documentation QC criteria

Difficulty 4/5 3-5 days Newbie friendliness 25/100

TheAxonLab/hcph-sops#441 · Opened Feb 6, 2024

Allow to tweak confounds regressed for FC extraction Open

TheAxonLab/hcph-sops#438 · 1 assignee · Opened Feb 5, 2024

We could be more explicit about how to set the calibrations points for GA calibration Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 48/100

TheAxonLab/hcph-sops#432 · 1 reaction · Opened Jan 26, 2024

Testing the synchronization server : what output corresponds to a successful installation? Open

documentation

Difficulty 3/5 1-2 days Newbie friendliness 35/100

TheAxonLab/hcph-sops#431 · Opened Jan 26, 2024

Clarification needed about Dropbox configuration Open

documentation

Difficulty 2/5 1-3 hours Newbie friendliness 45/100

TheAxonLab/hcph-sops#430 · Opened Jan 26, 2024

Missing information in creating the AcqKnowledge's template graph file Open

bug documentation

Difficulty 2/5 1-3 hours Newbie friendliness 30/100

TheAxonLab/hcph-sops#429 · 1 comment · Opened Jan 26, 2024

BUG: Overlenient parsing of *Psychopy*'s log inserting offset in events file Open

bug

TheAxonLab/hcph-sops#427 · 1 assignee · Opened Jan 25, 2024

Move FC report generation to nireports Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

TheAxonLab/hcph-sops#422 · 1 comment · Opened Jan 19, 2024

Error in description of the NSD dataset (Table 2). Open

manuscript

TheAxonLab/hcph-sops#420 · 1 assignee · Opened Jan 18, 2024

DWI MRIQC report were not generated Open

mriqc

Difficulty 4/5 3-5 days Newbie friendliness 25/100

TheAxonLab/hcph-sops#418 · 2 comments · Opened Jan 15, 2024

Running fMRIPrep roadmap Open

fmriprep

Difficulty 4/5 3-5 days Newbie friendliness 20/100

TheAxonLab/hcph-sops#417 · Opened Jan 15, 2024

Units of the respiration belt Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

TheAxonLab/hcph-sops#409 · 7 comments · Opened Dec 5, 2023

Cannot run ses-048 and ses-041 through fMRIPrep Open

bug data(lad) fmriprep

Difficulty 4/5 3-5 days Newbie friendliness 25/100

TheAxonLab/hcph-sops#396 · 4 comments · Opened Nov 23, 2023

Exclusion criteria for sudden movement during dMRI related to sleep Open

Difficulty 5/5 Over a week Newbie friendliness 15/100

TheAxonLab/hcph-sops#391 · Opened Nov 23, 2023

`_eyetrack.json` wrongly define `StartTime` and `StopTime` Open

eye-tracking

TheAxonLab/hcph-sops#354 · 4 comments · 1 assignee · Opened Nov 9, 2023

Write physio QC procedures and criteria Open

documentation physio

TheAxonLab/hcph-sops#349 · 1 assignee · Opened Nov 8, 2023

ET: Convert all sessions to BIDS Open

eye-tracking

TheAxonLab/hcph-sops#345 · 1 comment · 1 assignee · Opened Nov 8, 2023

Create a Jupyter notebook demonstrating ET conversion into BIDS Open

eye-tracking urgent

TheAxonLab/hcph-sops#344 · 1 assignee · Opened Nov 8, 2023

Include ET "messages" within the BIDS distribution of the dataset Open

eye-tracking

TheAxonLab/hcph-sops#341 · 1 assignee · Opened Nov 7, 2023

Consider unit tests on code generating events files and physio Open

TheAxonLab/hcph-sops#339 · 1 assignee · Opened Nov 7, 2023

Deep revision of physio of session 4 Open

TheAxonLab/hcph-sops#325 · 1 assignee · Opened Nov 1, 2023

Convert physio to BIDS - sessions 11 and 13 Open

TheAxonLab/hcph-sops#324 · 1 assignee · Opened Nov 1, 2023

Get the MR helium level as described in the SOP Open

TheAxonLab/hcph-sops#259 · 5 comments · 1 reaction · 1 assignee · Opened Oct 17, 2023

We should verify ManufacturersModelName, DeviceSerialNumber, and SoftwareVersion on the ET computer during the next scanning session Open

eye-tracking urgent

TheAxonLab/hcph-sops#238 · 10 comments · 2 assignees · Opened Oct 11, 2023

BIDS names of eye-tracking data do not follow the eye-tracking BEP Open

eye-tracking urgent

TheAxonLab/hcph-sops#235 · 1 assignee · Opened Oct 11, 2023

NaN value in ET data must be replaced by ``n/a`` Open

eye-tracking urgent

TheAxonLab/hcph-sops#233 · 1 assignee · Opened Oct 10, 2023

Load functional atlas using *TemplateFlow* Open

enhancement

TheAxonLab/hcph-sops#212 · 1 assignee · Opened Sep 27, 2023

Functional connectivity roadmap Open

enhancement

TheAxonLab/hcph-sops#208 · 1 assignee · Opened Sep 26, 2023

Use rapidtide to fix potential inflation in FC Open

enhancement

TheAxonLab/hcph-sops#207 · 5 comments · 1 assignee · Opened Sep 26, 2023

TheAxonLab

Get new issues in your inbox