ReproNim/containers

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Containers "distribution" for reproducible neuroimaging

Stars: 32
Forks: 17
Open beginner issues: 0
Indexed issues: 42
Avg merge: 12h 2m
Merged PRs (30d): 3

Dominant language: Python
License: Apache-2.0
Last GitHub push: Sep 18, 2026
Latest indexed: Sep 20, 2026
Contributing guide: No contributing guide
Code of conduct: No code of conduct
Beginner labels: No beginner labels indexed

Beginner friendly Everything

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42 open issues indexed

Add "bindpaths" configuration Open

ReproNim/containers#171 · 1 assignee · Opened Sep 14, 2026
download_url gives no retry and a confusing, redundantly-nested error on large-file IncompleteRead/connection-reset failures Open

Difficulty 4/5 3-5 days Newbie friendliness 45/100

ReproNim/containers#169 · Opened Sep 14, 2026
Check/fixup/extend support for building from other docker registries Open

ReproNim/containers#160 · 1 reaction · 2 assignees · Opened Apr 23, 2026
slow download through git-annex from datasets.datalad.org Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

ReproNim/containers#155 · Opened Dec 30, 2025
Add AIND containers Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

ReproNim/containers#144 · 1 comment · Opened Aug 8, 2025
need to bind mount .git/annex folder targets of ephemeral clones Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/containers#134 · Opened Dec 20, 2024
bibsnet fails Open

Difficulty 4/5 3-5 days Newbie friendliness 20/100

ReproNim/containers#127 · Opened Jul 18, 2024
flake: README example mriqc script, RuntimeError: Xvfb did not start Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

ReproNim/containers#125 · 2 comments · Opened Jun 5, 2024
Add rudimentary testing of executability for freshly added containers Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/containers#120 · Opened May 24, 2024
Fails while running on OSX Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/containers#119 · 3 comments · Opened May 23, 2024
Add "etelemetry" to singularity_cmd Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#116 · Opened May 22, 2024
Provide neurodesk convenience command Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

ReproNim/containers#113 · Opened Apr 18, 2024
Establish collection of health checks Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#112 · 1 comment · Opened Apr 8, 2024
Add option for "--bind" when running containers Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

ReproNim/containers#111 · 2 comments · Opened Apr 6, 2024
Investigate CDI support Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

ReproNim/containers#95 · Opened May 8, 2023
Make testing actually test the version of this dataset as provided in PR Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/containers#89 · Opened Mar 23, 2023
JOSS paper Open

enhancement

Difficulty 5/5 Over a week Newbie friendliness 20/100

ReproNim/containers#85 · 1 comment · Opened Feb 20, 2023
Warning in output: Set MPLCONFIGDIR when running bids-mriqc Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

ReproNim/containers#83 · 4 comments · Opened Feb 7, 2023
Go through the typical workflow and "relate" to reproman workflow Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/containers#79 · 3 comments · Opened Feb 1, 2023
Add fmriprep-fake BIDS-App container Open

ReproNim/containers#77 · 1 reaction · 1 assignee · Opened Oct 21, 2022
Add containers for ABCD apps Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#74 · 2 comments · Opened Sep 15, 2022
"Semantic" shim to provide "ReproNim"ification of outputs Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#70 · Opened Jun 30, 2022
Support M1 (arm64) Macs Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/containers#67 · 3 comments · Opened May 23, 2022
Robustify deployment or script to not produce broken singularity images Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

ReproNim/containers#66 · Opened Jan 6, 2022
Allow for setting to map PWD into consistent path inside container Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/containers#63 · Opened Dec 10, 2021
prototypical example fails on a fresh NITRC-CE EC2 instance: BIDS root does not exist Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

ReproNim/containers#53 · Opened Dec 15, 2020
special treatment to stop underlying docker container if running via shim? Open

Difficulty 4/5 3-5 days Newbie friendliness 30/100

ReproNim/containers#52 · Opened Dec 10, 2020
"Typical workflow" observations on Windows Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/containers#50 · Opened Nov 10, 2020
Use docker images support in datalad-container to construct(/run?) our docker shim Open

Difficulty 5/5 Over a week Newbie friendliness 10/100

ReproNim/containers#49 · Opened Oct 29, 2020
script to mirror all versions of containers from docker hub Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#48 · 13 comments · Opened Oct 27, 2020
bids/hcppipelines does not expose entrypoint, when original docker container does Open

ReproNim/containers#35 · 1 comment · 1 assignee · Opened Jan 8, 2020
Quick help on container output Open

Difficulty 2/5 1-3 hours Newbie friendliness 25/100

ReproNim/containers#34 · Opened Dec 12, 2019
Add https://github.com/ml-tooling/ml-workspace Open

containers

Difficulty 4/5 3-5 days Newbie friendliness 25/100

ReproNim/containers#32 · 2 comments · Opened Oct 30, 2019
FOI: bats-assert Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/containers#29 · 1 comment · Opened Aug 7, 2019
trouble running singularity in sanitized environment under /home or /tmp subdirectories Open

Difficulty 4/5 3-5 days Newbie friendliness 15/100

ReproNim/containers#23 · 1 comment · Opened Jul 18, 2019
Ability to get new containers while having all prior or used containers frozen to specific version Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#8 · 5 comments · Opened May 8, 2019
Prototypical workflow #1 Open

Difficulty 5/5 Over a week Newbie friendliness 22/100

ReproNim/containers#7 · 3 comments · Opened May 8, 2019
Add boutiques Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/containers#6 · Opened May 3, 2019
Deploy "cron" job somewhere to bring in updates automatically Open

Difficulty 4/5 3-5 days Newbie friendliness 25/100

ReproNim/containers#5 · Opened May 3, 2019
Establish testing of containerized apps Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#4 · 2 comments · Opened May 2, 2019
add repronim/ and other additional commonly used images Open

Difficulty 3/5 1-2 days Newbie friendliness 35/100

ReproNim/containers#2 · Opened Apr 26, 2019
Add docker images Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

ReproNim/containers#1 · Opened Apr 23, 2019

ReproNim/containers

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