Exception when preparing an amplicon library with a 384 well plate
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评估
调研方向
先从 gui/handlers/process_handlers/library_prep_16s_process.py 中报告的 post handler 入手,然后检查 db/process.py 中 create primer_layout 附近的代码。使用一个 384 孔扩增子板和不匹配的引物板重现准备流程。完成的标准是:该情况通过显式验证得到处理,而不是产生报告中的 IndexError;在更改行为之前,确认预期的板尺寸规则。
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描述
In my test environment, I have amplicon 384-well plates. It appears that the prepare amplicon libraries page is not presently validating that the primer plates have the same number of wells. I'm not sure if we ever want to do 384 well amplicon plates, but we may want to have validation here to disallow the user from doing something they shouldn't be able to do.
I can't remember if this is a duplicate or not -- it felt familiar but I didn't see an issue when flipping through.

AN ERROR HAS OCCURED!
Please copy the following into an issue in our github repository
Error
list index out of range
Traceback
Traceback (most recent call last):
File "/Users/dtmcdonald/miniconda3/envs/labcontrol/lib/python3.7/site-packages/tornado/web.py", line 1697, in _execute result = method(*self.path_args, **self.path_kwargs)
File "/Users/dtmcdonald/miniconda3/envs/labcontrol/lib/python3.7/site-packages/tornado/web.py", line 3174, in wrapper return method(self, *args, **kwargs)
File "/Users/dtmcdonald/ResearchWork/software/labman/labcontrol/gui/handlers/process_handlers/library_prep_16s_process.py", line 88, in post for pid, pn, pp, ep, ep300, ep50, mm, w in json_decode(plates_info)
File "/Users/dtmcdonald/ResearchWork/software/labman/labcontrol/gui/handlers/process_handlers/library_prep_16s_process.py", line 88, in for pid, pn, pp, ep, ep300, ep50, mm, w in json_decode(plates_info)
File "/Users/dtmcdonald/ResearchWork/software/labman/labcontrol/db/process.py", line 933, in create primer_layout[i][j].composition)
IndexError: list index out of range
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