vegandevs

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• rclr / robust.aitchison: documentation suggests only zeros are imputed, but all entries are replaced by the rank-`ropt` reconstruction

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  Difficulty 2/5 1-3 hours Newbie friendliness 72/100

  vegandevs/vegan#806 · 1 comment · Opened Oct 29, 2026

• Should permustats() always return a matrix or permutations?

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  Difficulty 3/5 1-2 days Newbie friendliness 50/100

  vegandevs/vegan#803 · Opened Oct 28, 2026

• cascadeKM runs cannot be replicated in parallel processing

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  Difficulty 5/5 Over a week Newbie friendliness 35/100

  vegandevs/vegan#802 · 5 comments · Opened Oct 11, 2026

• Formal tests in vegan

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  Difficulty 5/5 Over a week Newbie friendliness 20/100

  vegandevs/vegan#799 · 1 comment · Opened Sep 15, 2026

• Increase R dependency to 4.4 in vegan 2.8

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  Difficulty 2/5 1-3 hours Newbie friendliness 45/100

  vegandevs/vegan#788 · 5 comments · Opened Jul 7, 2026

• Consider Adding CONTRIBUTING File

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  Difficulty 2/5 1-3 hours Newbie friendliness 55/100

  vegandevs/vegan#784 · 2 comments · Opened Apr 10, 2026

• Investigate Warning-Text Consistency Across Messages

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  Difficulty 4/5 3-5 days Newbie friendliness 48/100

  vegandevs/vegan#780 · Opened Apr 10, 2026

• Extending mantel() test for asymmetric matrices

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  feature-request

  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  vegandevs/vegan#747 · 1 comment · Opened Jun 20, 2025

• Group functions on the pkgdown site Reference page

  May be free again @gavinsimpson claimed this 1494 days ago, and no pull request is open. Open

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  documentation not-a-bug work-in-progress

  vegandevs/vegan#534 · 1 assignee · Opened Sep 29, 2022

• plot.betadisper could use ordispider and or ordihull

  May be free again @gavinsimpson claimed this 1495 days ago, and no pull request is open. Open

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  enhancement work-in-progress

  vegandevs/vegan#533 · 1 assignee · Opened Sep 28, 2022

• Calculating RDA on large datasets

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  Difficulty 4/5 3-5 days Newbie friendliness 25/100

  vegandevs/vegan#527 · 3 comments · Opened Sep 15, 2022

• Newer Chao et al. FD indices?

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  feature-request

  Difficulty 5/5 Over a week Newbie friendliness 25/100

  vegandevs/vegan#461 · 2 comments · Opened Jan 20, 2022

• Vegan Hexagon Logo

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  Difficulty 5/5 Over a week Newbie friendliness 15/100

  vegandevs/vegan#436 · 1 comment · Opened Aug 20, 2021

• Proper way to test for nested effects within adonis2

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  Difficulty 4/5 3-5 days Newbie friendliness 20/100

  vegandevs/vegan#428 · Opened Jun 14, 2021

• Pairwise comparison in betadisper - when to adjust for small sample size or unequal sample sizes

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  Difficulty 2/5 1-3 hours Newbie friendliness 25/100

  vegandevs/vegan#423 · 3 comments · Opened May 27, 2021

• Pairwise comparison in betadisper - How to interpret the p value?

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  help-request

  Difficulty 2/5 1-3 hours Newbie friendliness 25/100

  vegandevs/vegan#422 · 1 comment · Opened May 23, 2021

• Gini coefficient

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  Difficulty 4/5 3-5 days Newbie friendliness 25/100

  vegandevs/vegan#419 · 3 comments · Opened May 14, 2021

• calculating the distance between two centroids

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  Difficulty 4/5 3-5 days Newbie friendliness 20/100

  vegandevs/vegan#404 · 2 comments · Opened Apr 1, 2021

• AIC calculation from cca/rda objects

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  Difficulty 4/5 3-5 days Newbie friendliness 30/100

  vegandevs/vegan#400 · 3 comments · Opened Mar 5, 2021

• Differences between vegan::rda and calibrate::rda

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  Difficulty 4/5 3-5 days Newbie friendliness 25/100

  vegandevs/vegan#398 · Opened Feb 20, 2021

• Metavisualizations using vegan

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  Difficulty 5/5 Over a week Newbie friendliness 20/100

  vegandevs/vegan#391 · 2 comments · Opened Jan 15, 2021

• Help strata argument in adonis function

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  Difficulty 4/5 3-5 days Newbie friendliness 20/100

  vegandevs/vegan#384 · 10 comments · Opened Nov 26, 2020

• Distance Decay plot - help

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  Difficulty 4/5 3-5 days Newbie friendliness 15/100

  vegandevs/vegan#383 · Opened Nov 10, 2020

• Want to use Vegan::capscale to calculate and plot distance based- redundancy analysis (db-RDA) and add correlation cut-offs in the results

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  Difficulty 4/5 3-5 days Newbie friendliness 15/100

  vegandevs/vegan#380 · Opened Sep 9, 2020

• help with correct adonis model specification

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  Difficulty 4/5 3-5 days Newbie friendliness 20/100

  vegandevs/vegan#364 · Opened Jun 3, 2020

• Feature request: Extend CAP to include Canonical Analysis of Principal Coordinates based on Discriminant Analysis

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  feature-request

  Difficulty 5/5 Over a week Newbie friendliness 25/100

  vegandevs/vegan#361 · 4 comments · Opened May 9, 2020

• Request: support for nested designs with Adonis/Adonis2

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  vegandevs/vegan#355 · 7 comments · 2 reactions · Opened Apr 20, 2020

• adding parallel permutations for envfit?

  May be free again @gavinsimpson claimed this 2413 days ago, and no pull request is open. Open

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  feature-request

  vegandevs/vegan#348 · 7 comments · 1 assignee · Opened Mar 11, 2020

• PERMANOVA and the Behrens-Fisher F statistic

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  Difficulty 5/5 Over a week Newbie friendliness 20/100

  vegandevs/vegan#344 · 7 comments · Opened Feb 10, 2020

• beta diversity and permutation analysis

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  Difficulty 4/5 3-5 days Newbie friendliness 15/100

  vegandevs/vegan#321 · Opened Jul 20, 2019

• Function to return percent inertia explained for cca.objects

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  feature-request

  Difficulty 3/5 1-2 days Newbie friendliness 30/100

  vegandevs/vegan#266 · 4 comments · Opened Feb 23, 2018

• qqmath.permustats and reference distribution

  May be free again @gavinsimpson claimed this 3727 days ago, and no pull request is open. Open

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  enhancement

  vegandevs/vegan#172 · 4 comments · 1 assignee · Opened Apr 28, 2016

• resurrect obsolete permatswap & permatfull

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  enhancement

  Difficulty 5/5 Over a week Newbie friendliness 28/100

  vegandevs/vegan#159 · 4 comments · Opened Mar 30, 2016

• suggested plots to have (feature request)

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  feature-request

  Difficulty 4/5 3-5 days Newbie friendliness 25/100

  vegandevs/vegan#108 · 4 comments · Opened Mar 29, 2015

• Methods to identify the number of nontrivial axes in wcmdscale

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  feature-request

  Difficulty 5/5 Over a week Newbie friendliness 25/100

  vegandevs/vegan#78 · 6 comments · Opened Nov 18, 2014

• Add the modified pseudo F statistic from Anderson et al 2017 to account for heterogeneity in adonis/adonis2

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  enhancement request-for-comments

  Difficulty 5/5 Over a week Newbie friendliness 25/100

  vegandevs/vegan#491 · 5 comments · 2 reactions · Opened Feb 28, 2022