Check reproducibility of Steinbock and NanoString notebooks on Windows
Nobody has claimed this yet.
Assessment
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Newbie friendliness
- 30/100
- Issue type
- Bug
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- jupyter-notebook
- Domain
- operating-systems, testing
Research direction
Start by running the Steinbock and NanoString notebooks on Windows and review the linked spatialdata-io and spatialdata issues for the reported path behavior. Compare the resulting AnnData paths and notebook outputs with the expected results; done means the reproducibility problem is confirmed and the affected notebook steps or paths are identified.
Written by the indexing model from the issue text.
Description
As reported here for Steinbock (https://github.com/scverse/spatialdata-io/issues/129) and here for NanoString (https://github.com/scverse/spatialdata/issues/637), it looks like that / in paths (I guess inside one of the AnnData objects), create reproducibility issues on Windows machine.
- Dominant language
- Jupyter Notebook
- Stars
- 67
- Forks
- 26
- Avg merge
- 4m
- Merged PRs (30d)
- 1
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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