pemsley

Issues somebody may already be working on are listed last. List everything by date

• user_defined_click_py() returns an unset molecule ID

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  Difficulty 2/5 1-3 hours Newbie friendliness 72/100

  pemsley/coot#413 · Opened Oct 10, 2026

• The latest build fails on homebrew

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  Difficulty 4/5 3-5 days Newbie friendliness 45/100

  pemsley/coot#412 · 1 comment · Opened Oct 6, 2026

• SSM_superpose traps under WebAssembly (after the transform is applied)

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  Difficulty 4/5 3-5 days Newbie friendliness 45/100

  pemsley/coot#411 · 2 comments · Opened Oct 6, 2026

• Coot ignores default bond thickness when loading molecule via CLI

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  Difficulty 3/5 1-2 days Newbie friendliness 58/100

  pemsley/coot#410 · 2 comments · Opened Sep 30, 2026

• Set clipping planes?

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  Difficulty 4/5 3-5 days Newbie friendliness 52/100

  pemsley/coot#409 · 3 comments · Opened Sep 30, 2026

• Metal coordination sigmas or better approach?

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  Difficulty 4/5 3-5 days Newbie friendliness 55/100

  pemsley/coot#408 · Opened Sep 30, 2026

• Coot writes newly added residues to mmCIF with invalid label_* fields

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  Difficulty 4/5 3-5 days Newbie friendliness 52/100

  pemsley/coot#405 · 2 comments · Opened Sep 27, 2026

• Issue: GUI crash on linux when using menus

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  Difficulty 4/5 3-5 days Newbie friendliness 45/100

  pemsley/coot#404 · Opened Sep 25, 2026

• Modifications to range-pair mechanic?

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  Difficulty 5/5 Over a week Newbie friendliness 30/100

  pemsley/coot#401 · 1 reaction · Opened Aug 21, 2026

• Secondary structure restraints don't seem to do anything during refinement (1.3.3)

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  Difficulty 4/5 3-5 days Newbie friendliness 45/100

  pemsley/coot#400 · Opened Aug 21, 2026

• Proportional editing, but for adjustable residue ranges rather than spherical zones

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  pemsley/coot#399 · Opened Aug 21, 2026

• Copy NCS chain gives no indication of success or failure

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  Difficulty 4/5 1-2 days Newbie friendliness 48/100

  pemsley/coot#398 · 1 comment · Opened Aug 21, 2026

• Autosave

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  Difficulty 3/5 1-2 days Newbie friendliness 46/100

  pemsley/coot#397 · 2 comments · Opened Aug 21, 2026

• Anisotropic atoms (ellipsoid) display menu missing in GTK4 UI (Coot 1.3)

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  Difficulty 3/5 1-2 days Newbie friendliness 58/100

  pemsley/coot#394 · 1 comment · Opened Aug 13, 2026

• An issue with centralised status file - multiple objects and map colour

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  Difficulty 4/5 3-5 days Newbie friendliness 42/100

  pemsley/coot#390 · 1 comment · Opened Aug 11, 2026

• Insertion codes and sequence view

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  pemsley/coot#379 · 1 comment · Opened Jun 29, 2026

• Request for GamePad Controls

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  pemsley/coot#378 · 1 comment · Opened Jun 29, 2026

• Problems mutating DNA in coot-1.1.20

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  pemsley/coot#376 · 1 comment · Opened Jun 23, 2026

• make_link_restraints_from_res_vec returning empty — temporary?

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  Difficulty 4/5 3-5 days Newbie friendliness 28/100

  pemsley/coot#374 · 1 comment · 1 reaction · Opened Jun 14, 2026

• MCP features

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  Difficulty 5/5 Over a week Newbie friendliness 25/100

  pemsley/coot#373 · 1 comment · Opened Jun 8, 2026

• add_to_non_drawn_bonds and graphics_to_occupancy_representation

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  pemsley/coot#372 · 1 comment · Opened Jun 8, 2026

• GTK3 artifacts?

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  Difficulty 2/5 1-3 hours Newbie friendliness 68/100

  pemsley/coot#371 · Opened Jun 5, 2026

• Sequence Viewer selection off by 1

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  Difficulty 3/5 1-2 days Newbie friendliness 55/100

  pemsley/coot#370 · 1 reaction · Opened Jun 3, 2026

• Symmetry Colours

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  pemsley/coot#369 · 2 comments · Opened Jun 3, 2026

• Rotamer selection menu

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  Difficulty 3/5 1-2 days Newbie friendliness 45/100

  pemsley/coot#368 · Opened Jun 2, 2026

• An option to disable NCS calculations.

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  Difficulty 4/5 3-5 days Newbie friendliness 45/100

  pemsley/coot#366 · 2 comments · Opened May 29, 2026

• NCS ghosts only ever offers last molecule in the list

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  Difficulty 4/5 3-5 days Newbie friendliness 45/100

  pemsley/coot#364 · 1 comment · Opened May 25, 2026

• Homebrew Coot needs VTE

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  Difficulty 3/5 1-2 days Newbie friendliness 52/100

  pemsley/coot#362 · 7 comments · Opened May 24, 2026

• 1.3.1 - clicking in sequence only works when centered on a C-alpha

  May be free again @kevinwithak claimed this 145 days ago, and no pull request is open. Open

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  Difficulty 4/5 3-5 days Newbie friendliness 38/100

  pemsley/coot#361 · 2 comments · Opened May 18, 2026

• File open dialog tremendously slow to build file lists on MacOS

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  Difficulty 4/5 3-5 days Newbie friendliness 42/100

  pemsley/coot#357 · 5 comments · Opened May 8, 2026

• molecule-class-info-backup.cc: error: call of overloaded 'log(log_t, logging::function_name_t, <brace-enclosed initializer list>)' is ambiguous

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  Difficulty 2/5 1-3 hours Newbie friendliness 70/100

  pemsley/coot#356 · 5 comments · Opened May 6, 2026

• Build error: `cc-interface-png.cc: error: 'RsvgLength' was not declared in this scope`

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  Difficulty 4/5 3-5 days Newbie friendliness 45/100

  pemsley/coot#355 · 1 comment · Opened May 6, 2026

• Sequence viewer - Only appears to show the latest open Model

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  Difficulty 4/5 3-5 days Newbie friendliness 42/100

  pemsley/coot#353 · 1 comment · Opened May 5, 2026

• Coot 1.1 pyrimidine building bug

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  Difficulty 4/5 3-5 days Newbie friendliness 32/100

  pemsley/coot#352 · 1 comment · 1 reaction · Opened May 2, 2026

• sequence renumbering not working

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  Difficulty 2/5 1-3 hours Newbie friendliness 55/100

  pemsley/coot#351 · 1 comment · Opened Apr 29, 2026

• alt conf occupancy slider/occ set in menu not working

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  Difficulty 3/5 1-2 days Newbie friendliness 48/100

  pemsley/coot#350 · Opened Apr 29, 2026

• Sequence view is not vertically scrollable

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  Difficulty 3/5 Half a day Newbie friendliness 55/100

  pemsley/coot#349 · 1 comment · Opened Apr 29, 2026

• Display functions - getters & setters

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  Difficulty 4/5 3-5 days Newbie friendliness 42/100

  pemsley/coot#348 · 1 comment · Opened Apr 28, 2026

• Losing model and maps on Macbook pro (M1 pro, Tahoe 26.4)

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  Difficulty 3/5 Half a day Newbie friendliness 50/100

  pemsley/coot#347 · 1 comment · Opened Apr 24, 2026

• trackpad rotation?

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  pemsley/coot#346 · 2 comments · Opened Apr 21, 2026

• v1.2 on macOS: drag and drop of .pdb or .mtz causes crash

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  Difficulty 4/5 3-5 days Newbie friendliness 40/100

  pemsley/coot#345 · 2 comments · Opened Apr 17, 2026

• Turn sounds off?

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  Difficulty 3/5 1-2 days Newbie friendliness 50/100

  pemsley/coot#343 · 2 comments · Opened Apr 14, 2026

• How to tutorial/guide for containerizing coot

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  Difficulty 2/5 1-3 hours Newbie friendliness 35/100

  pemsley/coot#341 · 6 comments · Opened Apr 3, 2026

• doubt regarding carbohydrate modules tab

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  Difficulty 2/5 1-3 hours Newbie friendliness 35/100

  pemsley/coot#340 · 5 comments · Opened Apr 3, 2026

• "Rock view" is not symmetric

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  Difficulty 3/5 1-2 days Newbie friendliness 35/100

  pemsley/coot#339 · Opened Apr 3, 2026

• Add PTM to residue doesn't work (1.2)

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  pemsley/coot#338 · 2 comments · Opened Apr 3, 2026

• Validation graph issues (1.2)

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  Difficulty 4/5 3-5 days Newbie friendliness 25/100

  pemsley/coot#337 · 1 comment · Opened Apr 2, 2026

• Errors on startup with coot 1.2 (`--HEAD`) installed using homebrew on MacOS Sequoia

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  Difficulty 3/5 1-2 days Newbie friendliness 35/100

  pemsley/coot#335 · 1 comment · Opened Apr 1, 2026

• Self restraints incorrect post mutation

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  Difficulty 4/5 3-5 days Newbie friendliness 35/100

  pemsley/coot#334 · 4 comments · Opened Mar 31, 2026

• mmCIF files saved in Coot (`--HEAD` rev 19584) do not open in Chimera or ChimeraX.

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  Difficulty 3/5 1-2 days Newbie friendliness 35/100

  pemsley/coot#333 · 1 comment · Opened Mar 31, 2026