nf-core/taxmarker
Identify taxonomically mislabelled sequences
Is nf-core/taxmarker beginner-friendly?
The maintainers of nf-core/taxmarker usually reply to a pull request within 1 day. No beginner-friendly issue is open right now; the list below has the other issues we hold for it.
- Stars
- 2
- Forks
- 3
- Open beginner issues
- 0
- Indexed issues
- 37
- Avg merge
- 1d 12h
- Merged PRs (30d)
- 25
- Dominant language
- Nextflow
- License
- MIT
- Last GitHub push
- Oct 22, 2026
- Latest indexed
- Sep 19, 2026
- Contributing guide
- Contributing guide
- Code of conduct
- Code of conduct
- Beginner labels
- good first issue
How to contribute to nf-core/taxmarker
- Read the contributing guide first: it says how the maintainers want changes proposed, tested and reviewed.
- The project ships a dev container: open it in Codespaces to get a working environment in your browser.
- Read its code of conduct: it covers issues and pull requests as well as chat.
- Follow the repository to hear when a new beginner-friendly issue opens, or look through the other issues below.
Issues somebody may already be working on are listed last. List everything by date
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Difficulty 2/5 1-3 hours Newbie friendliness 67/100
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 35/100
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 35/100
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 25/100
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 35/100
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 25/100
nf-core/taxmarker#68 · 7 comments ·
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 28/100
nf-core/taxmarker#61 · 1 comment ·
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 35/100
nf-core/taxmarker#55 · 3 comments ·
Maintainers usually reply within 1 day
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
nf-core/taxmarker#41 · 3 comments ·
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 35/100
nf-core/taxmarker#39 · 2 comments ·
Maintainers usually reply within 1 day
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Difficulty 5/5 Over a week Newbie friendliness 28/100
nf-core/taxmarker#33 · 3 comments ·
Maintainers usually reply within 1 day
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SATIVA flags: stem placements (confidence 0.51) and long-branch attractors (WJMO01, Huberarchaeum)May be free again @Aaramis claimed this 29 days ago, and no pull request is open. Open
nf-core/taxmarker#32 · 8 comments · 1 assignee ·
Maintainers usually reply within 1 day
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
Maintainers usually reply within 1 day
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Difficulty 3/5 1-2 days Newbie friendliness 74/100
Maintainers usually reply within 1 day
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Treat placeholder ranks such as `_sp` and `_Incertae_sedis` as unresolvedPossibly taken @erikrikarddaniel claimed this today. Open
Difficulty 4/5 3-5 days Newbie friendliness 25/100
Maintainers usually reply within 1 day
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docs/output.md is still the template: document the pipeline's real outputsPossibly taken @Sofokli5 claimed this 7 days ago. Open
Difficulty 3/5 1-2 days Newbie friendliness 76/100
nf-core/taxmarker#31 · 1 comment · 1 assignee ·
Maintainers usually reply within 1 day