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nf-core/circrna

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circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Is nf-core/circrna beginner-friendly?

The maintainers of nf-core/circrna usually reply to a pull request within 1 day. No beginner-friendly issue is open right now; the list below has the other issues we hold for it.

Stars
61
Forks
33
Open beginner issues
0
Indexed issues
31
Avg merge
6h 33m
Merged PRs (30d)
11
Dominant language
Nextflow
License
MIT
Last GitHub push
Oct 8, 2026
Latest indexed
Sep 19, 2026
Contributing guide
Code of conduct
Beginner labels
No beginner labels indexed

How to contribute to nf-core/circrna

  1. Read the contributing guide first: it says how the maintainers want changes proposed, tested and reviewed.
  2. The project ships a dev container: open it in Codespaces to get a working environment in your browser.
  3. Read its code of conduct: it covers issues and pull requests as well as chat.
  4. Follow the repository to hear when a new beginner-friendly issue opens, or look through the other issues below.
Beginner friendly Everything
Open All

Issues somebody may already be working on are listed last. List everything by date

  • Make local modules and their tests self-contained following nf-core conventions
    Open
    • Is something wrong?
    enhancement

    Difficulty 4/5 3-5 days Newbie friendliness 48/100

    nf-core/circrna#253 ·

    Maintainers usually reply within 1 day

  • DESeq2 analysis from abundance.tsv files
    Open
    • Is something wrong?
    enhancement

    Difficulty 1/5 Under an hour Newbie friendliness 25/100

    nf-core/circrna#224 ·

    Maintainers usually reply within 1 day

  • Implement CycleR
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 15/100

    nf-core/circrna#200 ·

    Maintainers usually reply within 1 day

  • Implement CircExplorer3/CLEAR
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 20/100

    nf-core/circrna#198 ·

    Maintainers usually reply within 1 day

  • Add limit for maximum circRNA length
    Open
    • Is something wrong?
    enhancement

    Difficulty 5/5 Over a week Newbie friendliness 25/100

    nf-core/circrna#189 ·

    Maintainers usually reply within 1 day

  • Add `psirc quant` output to MulitQC via `kallisto` module
    Open
    • Is something wrong?
    enhancement first-timers-only

    Difficulty 4/5 3-5 days Newbie friendliness 25/100

    nf-core/circrna#146 ·

    Maintainers usually reply within 1 day

  • Implement polyA-Benchmarking
    May be free again Open
    • Is something wrong?
    feature-request

    nf-core/circrna#143 · 1 assignee ·

    Maintainers usually reply within 1 day

  • Add support for RNAse-R effect correction
    Open
    • Is something wrong?
    feature-request first-timers-only

    Difficulty 4/5 3-5 days Newbie friendliness 35/100

    nf-core/circrna#105 ·

    Maintainers usually reply within 1 day

  • Implement coding potential analysis
    May be free again Open
    • Is something wrong?
    feature-request first-timers-only

    nf-core/circrna#93 · 1 assignee ·

    Maintainers usually reply within 1 day

  • Implement miRNA sponging analysis
    Possibly taken Open
    • Is something wrong?
    feature-request

    nf-core/circrna#137 · 1 assignee ·

    Maintainers usually reply within 1 day

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