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lpipes

1 indexed repository · View on GitHub

tronko
A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets

C · 27 stars

Beginner friendly Everything

Open All

Any parameter to enhance stringency/accuracy? Open

Difficulty 5/5 Over a week Newbie friendliness 25/100

lpipes/tronko#16 · Opened Apr 17, 2025
Support using both -s and -v together in tronko-build for improved partitioning Open

Difficulty 3/5 1-2 days Newbie friendliness 45/100

lpipes/tronko#15 · Opened Apr 16, 2025
18S database for tronko? Open

Difficulty 5/5 Over a week Newbie friendliness 20/100

lpipes/tronko#14 · Opened Apr 14, 2025
Possibly wrong taxonomy assignment by tronko using the latest available COI database on Zenodo? Open

Difficulty 4/5 3-5 days Newbie friendliness 35/100

lpipes/tronko#12 · 3 comments · Opened Apr 6, 2025
More info on the pre-built COI databases Open

Difficulty 3/5 1-2 days Newbie friendliness 42/100

lpipes/tronko#10 · Opened Mar 26, 2025

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