althonos/pycomsaCython
Cython bindings and Python interface to CoMSA, a compressor for multiple-sequence alignments.
(2 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
リポジトリ
althonos のリポジトリ
althonos/pyfamsaCython
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
(43 stars) (4 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyfastaniCython
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
(24 stars) (2 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyhcrfPython
A hidden conditional random field (HCRF) implementation in Python.
(3 stars) (1 fork) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyhmmerCython
Cython bindings and Python interface to HMMER3.
(164 stars) (17 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyinfernalCython
Cython bindings and Python interface to Infernal 1.1.
(9 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyjessCython
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures. Now 10x faster!
(11 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pymemesuiteCython
Cython bindings and Python interface to the MEME suite, a collection of tools for the analysis of sequence motifs.
(17 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pymuscle5Cython
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
(25 stars) (2 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyncbitkCython
Cython bindings and Python interface to the NCBI C++ ToolKit (including BLAST+).
(11 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyopalCython
Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.
(11 stars) (1 fork) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyorthoaniPython
A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
(36 stars) (4 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyphymlCython
Cython bindings and Python interface to PhyML 3.
(0 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyrodigalCython
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
(189 stars) (10 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyrodigal-gvPython
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
(23 stars) (4 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pysamCython
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
(0 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyskaniRust
PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
(29 stars) (2 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pyswrdCython
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search.
(5 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pysylphRust
PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
(21 stars) (0 forks) (0 件の索引済み issue) (0 件のオープンな good first issue)
althonos/pytantanCython
Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences.
(3 stars) (1 fork) (0 件の索引済み issue) (0 件のオープンな good first issue)