Replace SNOMED CT structure (S node) xrefs with entire (E node) xrefs
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Valutazione
- Difficoltà
- 4/5
- Tempo stimato
- 3-5 giorni
- Idoneità per principianti
- 35/100
- Tipo di issue
- Refactoring
- Chiarezza
- Abbastanza chiara
- Stato di attività
- Attiva
- Ambito
- data
Direzione di ricerca
The changes are SCTID xref lines in uberon.obo, one per affected Uberon term, so start by finding those terms there. Replace each listed S-node code with its E-node code, remove the six redundant S-node xrefs, and set aside the nine curator-judgment cases for a maintainer. Done means the replacements are applied, the file still validates, and the remaining mismatches are listed for review.
Scritto dal modello di indicizzazione a partire dal testo della issue.
Descrizione
Summary
About 690 Uberon terms have an SCTID xref to a SNOMED CT structure concept (the S node of SNOMED's Structure-Entire-Part model) rather than the entire concept (E node). Most Uberon SCTID xrefs (about 3,000) point at E nodes, and @cmungall explained in #3287 why that's the right choice:
I think the E node is the correct one, since the uberon class represents the entity. More importantly, equivalence axioms can be made between E nodes without incoherency.
This issue proposes replacing the S-node xrefs with the corresponding E-node xrefs, so that Uberon's SNOMED mappings are consistent.
How the list was made
- Started from the SCTID xrefs in
uberon.obo(releases/2026-10-01), excluding obsolete terms. - Classified each target code using SNOMED CT's own
has_entire_anatomy_structurerelationship (active relationships only, from the UMLS 2026AA release of SNOMEDCT_US). A code is an S node if it has an entire partner via that relationship. - For each S-node xref, proposed the single E node SNOMED links it to. Every S node here has exactly one E partner, so nothing was chosen by hand or by name matching.
This gives three groups:
- 675 xrefs to replace (S node → its E node). Table below.
- 6 xrefs to remove: the Uberon term already xrefs the E node as well as the S node.
- 9 xrefs that need a curator's judgment: the E node is already xref'd by a different Uberon term, usually the parent class (e.g. regional part of nervous system has the S node for nervous system, and nervous system has the E node). These are probably intentional or need a different target, so I haven't proposed a change.
Why it matters downstream
We use Uberon's SCTID xrefs in Babel (the Biomedical Data Translator's identifier normalization) to join Uberon terms with UMLS concepts. When the xref points at the S node, the Uberon term doesn't join the UMLS concept for the E node, and we end up with duplicate concepts. We don't want to treat S and E as equivalent on our side, for the reason given in #3287.
I'm happy to provide this as a TSV or SSSOM file, or open a PR, if that would be easier.
Xrefs to remove (Uberon term already xrefs the E node)
| Uberon term | Remove (S node) | Keep (E node) |
|---|---|---|
| UBERON:0000332 yellow bone marrow | SCTID:5023006 Structure of yellow bone marrow | SCTID:328639002 All yellow bone marrow |
| UBERON:0000361 red bone marrow | SCTID:75330005 Structure of red bone marrow | SCTID:328538003 All red bone marrow |
| UBERON:0001252 adventitia of ureter | SCTID:47879001 Structure of adventitia of ureter | SCTID:392273001 Entire adventitia of ureter |
| UBERON:0004410 distal epiphysis of fibula | SCTID:129111008 Structure of distal fibular epiphysis | SCTID:280018004 Entire distal fibular epiphysis |
| UBERON:0005396 carotid artery segment | SCTID:69105007 Carotid artery structure | SCTID:362040006 Entire carotid artery |
| UBERON:0007763 cerebellum vermis culmen | SCTID:89649002 Structure of culmen | SCTID:279384001 Entire culmen |
Needs curator judgment (E node already xref'd by another Uberon term)
| Uberon term | Current (S node) | E node | E node already on |
|---|---|---|---|
| UBERON:0000064 organ part | SCTID:113343008 Body organ structure | SCTID:272625005 Entire body organ | UBERON:0000062 |
| UBERON:0000073 regional part of nervous system | SCTID:25087005 Structure of nervous system | SCTID:278196006 Entire nervous system | UBERON:0001016 |
| UBERON:0002050 embryonic structure | SCTID:667009 Embryonic structure | SCTID:57991002 Entire embryo | UBERON:0000922 |
| UBERON:0003864 middle phalanx of manus | SCTID:113223004 Structure of middle phalanx of middle finger | SCTID:263408007 Entire middle phalanx of middle finger | UBERON:0004321 |
| UBERON:0008246 pyloric stomach | SCTID:280119005 Pyloric structure of stomach | SCTID:362143006 Entire pylorus | UBERON:0001166 |
| UBERON:0009569 subdivision of trunk | SCTID:22943007 Trunk structure | SCTID:262225004 Entire trunk | UBERON:0002100 |
| UBERON:0009753 adrenal gland cortex zone | SCTID:68594002 Adrenal cortex structure | SCTID:362584002 Entire adrenal cortex | UBERON:0001235 |
| UBERON:0010305 subdivision of conjunctiva | SCTID:29445007 Conjunctival structure | SCTID:181161008 Entire conjunctiva | UBERON:0001811 |
| UBERON:0036268 pelvic vein | SCTID:13152008 Structure of vein of pelvic region | SCTID:281481002 Entire vein of pelvic region | UBERON:0005610 |
675 xrefs to replace (S node → E node)
| Uberon term | Current SCTID (S node) | Proposed SCTID (E node) |
|---|---|---|
| UBERON:0000009 submucosa | 68439008 | 727181003 |
| UBERON:0000014 zone of skin | 20795001 | 244066003 |
| UBERON:0000030 lamina propria | 298225002 | 729607008 |
| UBERON:0000084 ureteric bud | 361528000 | 730486005 |
| UBERON:0000085 morula | 361474003 | 731028006 |
| UBERON:0000087 inner cell mass | 361456007 | 730425006 |
| UBERON:0000090 blastocele | 361455006 | 730424005 |
| UBERON:0000118 lung bud | 361427007 | 730398001 |
| UBERON:0000123 endoneurium | 15931004 | 726875001 |
| UBERON:0000124 epineurium | 64482002 | 727158000 |
| UBERON:0000127 facial nucleus | 280166009 | 729257007 |
| UBERON:0000130 transverse foramen | 280735005 | 729498002 |
| UBERON:0000161 orifice | 91837002 | 727328000 |
| UBERON:0000164 primitive urogenital sinus | 50961009 | 727073001 |
| UBERON:0000200 gyrus | 279165009 | 731130006 |
| UBERON:0000219 vertebral foramen of atlas | 281228008 | 729554004 |
| UBERON:0000331 ileal mucosa | 85458007 | 362152002 |
| UBERON:0000362 renal medulla | 30737000 | 362212006 |
| UBERON:0000365 urothelium | 30117005 | 726947002 |
| UBERON:0000365 urothelium | 57789003 | 727116003 |
| UBERON:0000379 tracheal mucosa | 660006 | 726085001 |
| UBERON:0000397 colonic epithelium | 42978003 | 727024005 |
| UBERON:0000400 jejunal epithelium | 57300004 | 727111008 |
| UBERON:0000410 bronchial mucosa | 30802009 | 726955009 |
| UBERON:0000444 lymphoid follicle | 64626006 | 727160003 |
| UBERON:0000459 uterine wall | 245485002 | 731119008 |
| UBERON:0000478 extraembryonic structure | 314908006 | 732106006 |
| UBERON:0000483 epithelium | 31610004 | 726961007 |
| UBERON:0000485 simple columnar epithelium | 32210007 | 726962000 |
| UBERON:0000486 multilaminar epithelium | 309044005 | 729903009 |
| UBERON:0000490 unilaminar epithelium | 309043004 | 731023002 |
| UBERON:0000929 pharyngeal branch of vagus nerve | 280298006 | 729322007 |
| UBERON:0000935 anterior commissure | 279313001 | 728929004 |
| UBERON:0000959 optic chiasma | 244453006 | 727986007 |
| UBERON:0000980 trochanter | 182047004 | 727713002 |
| UBERON:0001013 adipose tissue | 55603005 | 727103003 |
| UBERON:0001033 gustatory system | 423940004 | 731379009 |
| UBERON:0001063 flocculus | 279368002 | 728942004 |
| UBERON:0001073 ileocecal junction | 264021000 | 728632003 |
| UBERON:0001113 lobe of liver | 245378000 | 728286003 |
| UBERON:0001131 vertebral foramen | 280734009 | 729497007 |
| UBERON:0001134 skeletal muscle tissue | 426215008 | 730700001 |
| UBERON:0001140 renal vein | 116358006 | 727415008 |
| UBERON:0001193 hepatic artery | 76015000 | 727223007 |
| UBERON:0001200 submucosa of stomach | 52459002 | 727082007 |
| UBERON:0001201 serosa of stomach | 1353004 | 726090003 |
| UBERON:0001203 muscularis mucosae of stomach | 64551004 | 727159008 |
| UBERON:0001205 submucosa of small intestine | 691000 | 726094007 |
| UBERON:0001206 serosa of small intestine | 8266009 | 726025004 |
| UBERON:0001210 muscularis mucosae of small intestine | 36401004 | 726987007 |
| UBERON:0001213 intestinal villus | 23230007 | 726908004 |
| UBERON:0001232 collecting duct of renal tubule | 28202009 | 726936009 |
| UBERON:0001238 lamina propria of small intestine | 63588008 | 727154003 |
| UBERON:0001241 crypt of Lieberkuhn of small intestine | 52688008 | 727084008 |
| UBERON:0001246 interlobular bile duct | 83488001 | 731093007 |
| UBERON:0001249 spleen lymphoid follicle | 35845000 | 726983006 |
| UBERON:0001250 red pulp of spleen | 27579002 | 726929008 |
| UBERON:0001253 lamina propria of ureter | 2771005 | 726095008 |
| UBERON:0001260 serosa of urinary bladder | 5868002 | 726034009 |
| UBERON:0001265 trabecula of spleen | 61987002 | 727142003 |
| UBERON:0001276 epithelium of stomach | 64977002 | 727163001 |
| UBERON:0001282 intralobular bile duct | 227002 | 730807009 |
| UBERON:0001331 skin of penis | 35900000 | 361709005 |
| UBERON:0001348 brown adipose tissue | 15965003 | 726876000 |
| UBERON:0001362 perineal vein | 312507009 | 729937001 |
| UBERON:0001384 primary motor cortex | 11931008 | 726849000 |
| UBERON:0001435 carpal bone | 83936004 | 1148428005 |
| UBERON:0001471 skin of prepuce of penis | 39059001 | 727000002 |
| UBERON:0001498 muscle of pes | 67240005 | 265807005 |
| UBERON:0001500 muscle of manus | 110540008 | 367633004 |
| UBERON:0001590 pericardiacophrenic vein | 361626007 | 730529002 |
| UBERON:0001606 muscle of iris | 280888007 | 729514001 |
| UBERON:0001630 muscle organ | 71616004 | 731986005 |
| UBERON:0001672 anterior cerebral vein | 55155007 | 731074005 |
| UBERON:0001701 glossopharyngeal ganglion | 244451008 | 727984005 |
| UBERON:0001721 inferior vestibular nucleus | 280175006 | 729260000 |
| UBERON:0001725 cranial synchondrosis | 314228003 | 730039003 |
| UBERON:0001730 extrinsic ligament of larynx | 279550004 | 729031002 |
| UBERON:0001743 ligament of larynx | 279508004 | 729008002 |
| UBERON:0001744 lymphoid tissue | 181768009 | 727659009 |
| UBERON:0001747 parenchyma of thyroid gland | 371402001 | 731258007 |
| UBERON:0001781 layer of retina | 280657006 | 729479004 |
| UBERON:0001794 inner limiting layer of retina | 280677004 | 729485006 |
| UBERON:0001810 nerve plexus | 122455009 | 609394009 |
| UBERON:0001850 lacrimal drainage system | 280426002 | 419221005 |
| UBERON:0001882 nucleus accumbens | 427667007 | 1186704001 |
| UBERON:0001887 internal capsule of telencephalon | 85637007 | 279217003 |
| UBERON:0001902 epithelium of small intestine | 45480009 | 727033007 |
| UBERON:0001925 ventral lateral nucleus of thalamus | 279146001 | 728904005 |
| UBERON:0001941 lateral habenular nucleus | 361538005 | 1186707008 |
| UBERON:0001944 pretectal region | 416333003 | 730659000 |
| UBERON:0001957 submucosa of bronchus | 85546005 | 727271007 |
| UBERON:0001978 parenchyma of pancreas | 371401008 | 731257002 |
| UBERON:0001983 crypt of Lieberkuhn | 118652008 | 727433002 |
| UBERON:0001986 endothelium | 27168002 | 726924003 |
| UBERON:0001991 cervical ganglion | 181100007 | 727594009 |
| UBERON:0001994 hyaline cartilage tissue | 39298000 | 727004006 |
| UBERON:0001995 fibrocartilage | 91685003 | 727319001 |
| UBERON:0001997 olfactory epithelium | 37623003 | 726994005 |
| UBERON:0002008 cardiac nerve plexus | 280511002 | 729406005 |
| UBERON:0002009 pulmonary nerve plexus | 280512009 | 729407001 |
| UBERON:0002028 hindbrain | 303456008 | 732052001 |
| UBERON:0002053 zona glomerulosa of adrenal gland | 21476003 | 726897004 |
| UBERON:0002054 zona fasciculata of adrenal gland | 56069004 | 727104009 |
| UBERON:0002055 zona reticularis of adrenal gland | 47325000 | 727048001 |
| UBERON:0002066 umbilical vein | 367567000 | 731247003 |
| UBERON:0002132 dentate nucleus | 279221005 | 728909000 |
| UBERON:0002133 atrioventricular valve | 11124005 | 725604006 |
| UBERON:0002141 parvocellular oculomotor nucleus | 62088007 | 730831004 |
| UBERON:0002144 peripeduncular nucleus | 25949000 | 726922004 |
| UBERON:0002153 fastigial nucleus | 279224002 | 728910005 |
| UBERON:0002202 submucosa of trachea | 4419000 | 726071006 |
| UBERON:0002203 vasculature of eye | 123846009 | 731110007 |
| UBERON:0002222 perichondrium | 11881003 | 726848008 |
| UBERON:0002342 neural crest | 361462002 | 730427003 |
| UBERON:0002371 bone marrow | 421320006 | 731308002 |
| UBERON:0002385 muscle tissue | 91727004 | 727320007 |
| UBERON:0002418 cartilage tissue | 309312004 | 729906001 |
| UBERON:0002421 hippocampal formation | 422867004 | 731340003 |
| UBERON:0002447 palatine gland | 13604002 | 726861008 |
| UBERON:0002457 intersomitic artery | 360401001 | 732113006 |
| UBERON:0002458 spinal artery | 244228006 | 727913005 |
| UBERON:0002459 inferior palpebral vein | 422559003 | 731323007 |
| UBERON:0002464 nerve trunk | 281248001 | 731743003 |
| UBERON:0002511 trabecula carnea | 118755002 | 727434008 |
| UBERON:0002515 periosteum | 33840008 | 726973007 |
| UBERON:0002521 elastic tissue | 27197004 | 726925002 |
| UBERON:0002522 tunica media | 61695000 | 727140006 |
| UBERON:0002523 tunica intima | 87483006 | 727284003 |
| UBERON:0002564 lateral orbital gyrus | 279195001 | 1359915006 |
| UBERON:0002569 transverse temporal sulcus | 42387003 | 727021002 |
| UBERON:0002570 medial orbital gyrus | 279194002 | 1359914005 |
| UBERON:0002575 posterior orbital gyrus | 279197009 | 1359917003 |
| UBERON:0002586 calcarine sulcus | 279355005 | 730953001 |
| UBERON:0002592 juxtarestiform body | 110687007 | 730845005 |
| UBERON:0002600 limbic lobe | 279215006 | 728907003 |
| UBERON:0002606 neuropil | 67146008 | 730833001 |
| UBERON:0002616 regional part of brain | 384763002 | 730597007 |
| UBERON:0002633 motor nucleus of trigeminal nerve | 38390003 | 726998008 |
| UBERON:0002656 periamygdaloid area | 279214005 | 728906007 |
| UBERON:0002658 medial lemniscus of midbrain | 361568001 | 730501000 |
| UBERON:0002735 transverse pontine fibers | 79836003 | 727246009 |
| UBERON:0002742 lamina of septum pellucidum | 12164006 | 726850000 |
| UBERON:0002761 inferior frontal sulcus | 279343004 | 728937007 |
| UBERON:0002779 lateral superior olivary nucleus | 360477003 | 730188000 |
| UBERON:0002815 horizontal fissure of cerebellum | 314173004 | 730029009 |
| UBERON:0002817 secondary fissure of cerebellum | 314169002 | 730026002 |
| UBERON:0002818 posterolateral fissure of cerebellum | 314172009 | 730028001 |
| UBERON:0002819 apex of cochlea | 279776002 | 730955008 |
| UBERON:0002819 apex of cochlea | 279777006 | 729123009 |
| UBERON:0002834 cervical dorsal root ganglion | 278325008 | 1286980004 |
| UBERON:0002835 thoracic dorsal root ganglion | 278326009 | 1287004002 |
| UBERON:0002836 lumbar dorsal root ganglion | 278327000 | 1286989003 |
| UBERON:0002837 sacral dorsal root ganglion | 278328005 | 1286998000 |
| UBERON:0002870 dorsal motor nucleus of vagus nerve | 52884007 | 727085009 |
| UBERON:0002871 hypoglossal nucleus | 47361005 | 727049009 |
| UBERON:0002912 marginal sulcus | 279351001 | 728940007 |
| UBERON:0002920 callosal sulcus | 279349000 | 728939005 |
| UBERON:0002925 trigeminal nucleus | 280164007 | 729256003 |
| UBERON:0002930 tectopontine tract | 3301002 | 730810002 |
| UBERON:0002944 spinothalamic tract of medulla | 360570003 | 730217007 |
| UBERON:0002961 archicortex | 423918008 | 731377006 |
| UBERON:0003060 pronephric duct | 361406002 | 730379003 |
| UBERON:0003062 primitive knot | 361464001 | 730429000 |
| UBERON:0003064 intermediate mesoderm | 361476001 | 730439006 |
| UBERON:0003077 paraxial mesoderm | 361475002 | 730438003 |
| UBERON:0003081 lateral plate mesoderm | 361477005 | 730440008 |
| UBERON:0003220 metanephric mesenchyme | 361529008 | 730487001 |
| UBERON:0003329 submucosa of anal canal | 7892006 | 731044002 |
| UBERON:0003330 submucosa of rectum | 71683001 | 727202001 |
| UBERON:0003331 submucosa of colon | 61647009 | 727137006 |
| UBERON:0003332 submucosa of duodenum | 76519004 | 727226004 |
| UBERON:0003333 submucosa of jejunum | 70192009 | 727192002 |
| UBERON:0003335 serosa of colon | 90132000 | 727306000 |
| UBERON:0003336 serosa of duodenum | 1236009 | 726089007 |
| UBERON:0003396 mesentery of colon | 245457004 | 728297003 |
| UBERON:0003435 pedal digit nerve | 300056004 | 729613004 |
| UBERON:0003447 digit nerve of manus | 181015006 | 727553001 |
| UBERON:0003468 ureteric segment of renal artery | 65376008 | 727167000 |
| UBERON:0003477 vein of upper lip | 422755007 | 731334005 |
| UBERON:0003478 vein of lower lip | 422955002 | 731346009 |
| UBERON:0003480 vein of clitoris | 360819004 | 731198001 |
| UBERON:0003535 vagus X nerve trunk | 280308004 | 729325009 |
| UBERON:0003618 aorta tunica media | 48467007 | 727057007 |
| UBERON:0003657 limb joint | 312683002 | 731829004 |
| UBERON:0003672 dentition | 245543004 | 728315009 |
| UBERON:0003714 neural tissue | 91728009 | 110657001 |
| UBERON:0003715 splanchnic nerve | 264198001 | 728669000 |
| UBERON:0003716 recurrent laryngeal nerve | 24227007 | 731050007 |
| UBERON:0003718 muscle spindle | 12945004 | 726856006 |
| UBERON:0003719 Pacinian corpuscle | 37419002 | 730827005 |
| UBERON:0003832 esophagus muscle | 360961009 | 726810003 |
| UBERON:0003848 gonadal vein | 278192008 | 728815004 |
| UBERON:0003910 splenic sinusoid | 9081000 | 726028002 |
| UBERON:0003922 pancreatic epithelial bud | 360398004 | 730163008 |
| UBERON:0003923 dorsal pancreatic bud | 361435005 | 730406008 |
| UBERON:0003924 ventral pancreatic bud | 361437002 | 730408009 |
| UBERON:0003976 saccule duct | 279829002 | 730959002 |
| UBERON:0003977 utricle duct | 279819009 | 730957000 |
| UBERON:0003987 Hassall's corpuscle | 34223001 | 730826001 |
| UBERON:0003991 fourth ventricle median aperture | 279449001 | 728972005 |
| UBERON:0003992 fourth ventricle lateral aperture | 63426007 | 727152004 |
| UBERON:0004043 semicircular canal ampulla | 279759001 | 729115007 |
| UBERON:0004066 frontonasal prominence | 361486000 | 730449009 |
| UBERON:0004074 cerebellum vermis lobule I | 279380005 | 728944003 |
| UBERON:0004074 cerebellum vermis lobule I | 77232000 | 727233004 |
| UBERON:0004100 renal collecting system | 279371005 | 732008009 |
| UBERON:0004130 cerebellar layer | 360478008 | 730189008 |
| UBERON:0004132 trigeminal sensory nucleus | 280170001 | 729258002 |
| UBERON:0004153 ventricular septum intermedium | 361468003 | 730433007 |
| UBERON:0004170 spinal cord ventral commissure | 424149007 | 731383009 |
| UBERON:0004319 distal phalanx of pedal digit 5 | 10770001 | 731046000 |
| UBERON:0004341 primitive streak | 361438007 | 730409001 |
| UBERON:0004382 epiphysis of humerus | 313054009 | 730007005 |
| UBERON:0004383 epiphysis of tibia | 314626006 | 730115005 |
| UBERON:0004384 epiphysis of femur | 314625005 | 730114009 |
| UBERON:0004385 epiphysis of radius | 313055005 | 730008000 |
| UBERON:0004386 epiphysis of ulna | 313056006 | 730009008 |
| UBERON:0004387 epiphysis of phalanx of manus | 314620000 | 730112008 |
| UBERON:0004389 epiphysis of metatarsal bone | 313057002 | 730010003 |
| UBERON:0004390 epiphysis of metacarpal bone | 314907001 | 730154006 |
| UBERON:0004409 distal epiphysis of phalanx of manus | 272707006 | 728741000 |
| UBERON:0004411 proximal epiphysis of humerus | 280028008 | 729211005 |
| UBERON:0004414 proximal epiphysis of phalanx of manus | 272704004 | 728738009 |
| UBERON:0004415 proximal epiphysis of metatarsal bone | 119545008 | 272719003 |
| UBERON:0004419 proximal epiphysis of phalanx of manual digit 3 | 181997000 | 727700008 |
| UBERON:0004432 proximal epiphysis of distal phalanx of manual digit 2 | 263445001 | 728592005 |
| UBERON:0004433 proximal epiphysis of distal phalanx of manual digit 3 | 263446000 | 728593000 |
| UBERON:0004434 proximal epiphysis of distal phalanx of manual digit 4 | 263447009 | 728594006 |
| UBERON:0004435 proximal epiphysis of distal phalanx of manual digit 5 | 263448004 | 728595007 |
| UBERON:0004436 proximal epiphysis of middle phalanx of manual digit 2 | 263428006 | 728576000 |
| UBERON:0004437 proximal epiphysis of middle phalanx of manual digit 3 | 263429003 | 728577009 |
| UBERON:0004438 proximal epiphysis of middle phalanx of manual digit 4 | 263430008 | 728578004 |
| UBERON:0004439 proximal epiphysis of middle phalanx of manual digit 5 | 263431007 | 728579007 |
| UBERON:0004440 proximal epiphysis of proximal phalanx of manual digit 2 | 263412001 | 728560009 |
| UBERON:0004441 proximal epiphysis of proximal phalanx of manual digit 3 | 263413006 | 728561008 |
| UBERON:0004442 proximal epiphysis of proximal phalanx of manual digit 4 | 263414000 | 728562001 |
| UBERON:0004443 proximal epiphysis of proximal phalanx of manual digit 5 | 263415004 | 728563006 |
| UBERON:0004444 proximal epiphysis of distal phalanx of manual digit 1 | 182008001 | 727708001 |
| UBERON:0004445 proximal epiphysis of proximal phalanx of manual digit 1 | 181993001 | 727696000 |
| UBERON:0004446 epiphysis of phalanx | 280033007 | 729213008 |
| UBERON:0004448 distal epiphysis of phalanx | 110520001 | 727351000 |
| UBERON:0004545 external capsule of telencephalon | 279300007 | 728926006 |
| UBERON:0004637 otic capsule | 361515007 | 730475008 |
| UBERON:0004645 urinary bladder urothelium | 25631003 | 726919001 |
| UBERON:0004648 esophagus muscularis mucosa | 47720007 | 726780004 |
| UBERON:0004654 temporal process of zygomatic bone | 122772003 | 727446007 |
| UBERON:0004658 mandible head | 51354009 | 727075008 |
| UBERON:0004664 aorta tunica adventitia | 24996002 | 726918009 |
| UBERON:0004670 ependyma | 12766003 | 726854009 |
| UBERON:0004673 trigeminal nerve root | 280185007 | 729263003 |
| UBERON:0004674 facial nerve root | 280186008 | 729264009 |
| UBERON:0004681 vestibular system | 361533001 | 731242009 |
| UBERON:0004706 bulbus cordis | 361525002 | 731030008 |
| UBERON:0004722 deep cervical lymph node | 279145002 | 728903004 |
| UBERON:0004755 skeletal tissue | 309311006 | 729905002 |
| UBERON:0004786 gastrointestinal system mucosa | 410433007 | 731280005 |
| UBERON:0004858 cellular cartilage | 81997001 | 727252005 |
| UBERON:0004867 orbital cavity | 280541000 | 729423001 |
| UBERON:0004870 superficial cervical lymph node | 279144003 | 728902009 |
| UBERON:0004875 nephrogenic cord | 361405003 | 730378006 |
| UBERON:0004917 urethral sphincter | 277855007 | 728784004 |
| UBERON:0004918 internal urethral sphincter | 277856008 | 728785003 |
| UBERON:0004924 submucosa of pharynx | 19594009 | 726891003 |
| UBERON:0004925 submucosa of laryngopharynx | 47496006 | 727051008 |
| UBERON:0004928 submucosa of appendix | 86833001 | 727279009 |
| UBERON:0004943 submucosa of urinary bladder | 88384001 | 727288000 |
| UBERON:0004946 submucosa of ileum | 65374006 | 727166009 |
| UBERON:0004980 mucosa of ureter | 40476001 | 727013008 |
| UBERON:0005024 mucosa of soft palate | 245842003 | 728456008 |
| UBERON:0005039 mucosa of bronchiole | 10887006 | 725605007 |
| UBERON:0005042 inner epithelial layer of tympanic membrane | 36411006 | 726988002 |
| UBERON:0005046 mucosa of hard palate | 245841005 | 728455007 |
| UBERON:0005061 neural groove | 361463007 | 730428008 |
| UBERON:0005062 neural fold | 361461009 | 730426007 |
| UBERON:0005070 anterior neuropore | 361478000 | 730441007 |
| UBERON:0005071 posterior neuropore | 361479008 | 730442000 |
| UBERON:0005077 neuropore | 360408007 | 730165001 |
| UBERON:0005159 pyramid of medulla oblongata | 9535007 | 726839003 |
| UBERON:0005167 papillary duct | 110623009 | 727390001 |
| UBERON:0005169 interstitial tissue | 85293002 | 727269007 |
| UBERON:0005278 nail bed of finger | 244199003 | 727906005 |
| UBERON:0005279 nail bed of toe | 244200000 | 727907001 |
| UBERON:0005303 hypogastric nerve | 181061006 | 727579005 |
| UBERON:0005331 mesonephric renal vesicle | 361407006 | 730380000 |
| UBERON:0005351 paraflocculus | 51969002 | 727080004 |
| UBERON:0005360 inferior glossopharyngeal IX ganglion | 66031007 | 727170001 |
| UBERON:0005361 superior glossopharyngeal IX ganglion | 280362000 | 729364007 |
| UBERON:0005362 vagus X ganglion | 244452001 | 727985006 |
| UBERON:0005363 inferior vagus X ganglion | 14420006 | 726866003 |
| UBERON:0005364 superior vagus X ganglion | 280197008 | 729269004 |
| UBERON:0005412 optic fissure | 361508004 | 730468007 |
| UBERON:0005426 lens vesicle | 361510002 | 730470003 |
| UBERON:0005432 aortic sac | 361527005 | 730485009 |
| UBERON:0005455 interventricular groove | 277708006 | 728774000 |
| UBERON:0005460 left vitelline vein | 361446008 | 730417009 |
| UBERON:0005472 right vitelline vein | 361445007 | 730416000 |
| UBERON:0005479 superior mesenteric ganglion | 279276003 | 728921001 |
| UBERON:0005486 venous dural sinus | 54944003 | 727098000 |
| UBERON:0005600 crus commune | 279758009 | 729114006 |
| UBERON:0005601 dorsal mesocardium | 361454005 | 730423004 |
| UBERON:0005612 intercostal artery | 281134007 | 729546001 |
| UBERON:0005620 primary palate | 359541001 | 730156008 |
| UBERON:0005621 rhomboid | 277441005 | 728758005 |
| UBERON:0005669 peritoneal cavity mesothelium | 34073007 | 262511001 |
| UBERON:0005685 midgut dorsal mesentery | 361434009 | 730405007 |
| UBERON:0005734 tunica adventitia of blood vessel | 61066005 | 727133005 |
| UBERON:0005740 tunica intima of artery | 40022005 | 727010006 |
| UBERON:0005742 adventitia | 30180000 | 726948007 |
| UBERON:0005769 basement membrane of epithelium | 68989006 | 727186008 |
| UBERON:0005808 bone tissue of long bone | 425475006 | 730673009 |
| UBERON:0005810 cervical vertebra 1 anterior tubercle | 281224005 | 729551007 |
| UBERON:0005814 arch of atlas | 272708001 | 728742007 |
| UBERON:0005870 olfactory pit | 361485001 | 730448001 |
| UBERON:0005980 pectinate muscle | 277718001 | 728778002 |
| UBERON:0006134 nerve fiber | 88545005 | 726785009 |
| UBERON:0006136 unmyelinated nerve fiber | 46920005 | 726779002 |
| UBERON:0006211 buccopharyngeal membrane | 361412007 | 730383003 |
| UBERON:0006257 laryngotracheal groove | 361426003 | 730397006 |
| UBERON:0006271 orbital fissure | 280546005 | 729426009 |
| UBERON:0006275 pericardio-peritoneal canal | 361428002 | 730399009 |
| UBERON:0006279 pleuroperitoneal canal | 361413002 | 730384009 |
| UBERON:0006283 future cardiac ventricle | 361524003 | 730483002 |
| UBERON:0006284 early prosencephalic vesicle | 361480006 | 730443005 |
| UBERON:0006307 urogenital membrane | 172994001 | 727514005 |
| UBERON:0006311 chamber of eyeball | 280540004 | 729422006 |
| UBERON:0006325 laryngeal intrinsic ligament | 279557001 | 729034005 |
| UBERON:0006345 stapedial artery | 361518009 | 730478005 |
| UBERON:0006349 epigastric artery | 261400009 | 728516009 |
| UBERON:0006438 principal artery to hindlimb | 361443000 | 730414002 |
| UBERON:0006442 subhepatic recess | 36051002 | 726986003 |
| UBERON:0006447 L5 segment of lumbar spinal cord | 278775008 | 728841005 |
| UBERON:0006448 L1 segment of lumbar spinal cord | 278776009 | 728842003 |
| UBERON:0006449 L3 segment of lumbar spinal cord | 278778005 | 728844002 |
| UBERON:0006450 L2 segment of lumbar spinal cord | 278777000 | 728843008 |
| UBERON:0006451 L4 segment of lumbar spinal cord | 278779002 | 728845001 |
| UBERON:0006452 T4 segment of thoracic spinal cord | 278766006 | 728832000 |
| UBERON:0006453 T5 segment of thoracic spinal cord | 278767002 | 728833005 |
| UBERON:0006454 T6 segment of thoracic spinal cord | 278768007 | 728834004 |
| UBERON:0006455 T7 segment of thoracic spinal cord | 278769004 | 728835003 |
| UBERON:0006456 T8 segment of thoracic spinal cord | 278770003 | 728836002 |
| UBERON:0006457 T1 segment of thoracic spinal cord | 278762008 | 728829003 |
| UBERON:0006458 T2 segment of thoracic spinal cord | 278763003 | 728830008 |
| UBERON:0006459 T3 segment of thoracic spinal cord | 278764009 | 728831007 |
| UBERON:0006460 S1 segment of sacral spinal cord | 278780004 | 728846000 |
| UBERON:0006461 S2 segment of sacral spinal cord | 278781000 | 728847009 |
| UBERON:0006462 S3 segment of sacral spinal cord | 278782007 | 728848004 |
| UBERON:0006463 S4 segment of sacral spinal cord | 278783002 | 728849007 |
| UBERON:0006464 S5 segment of sacral spinal cord | 278784008 | 728850007 |
| UBERON:0006465 T9 segment of thoracic spinal cord | 278771004 | 728837006 |
| UBERON:0006466 T10 segment of thoracic spinal cord | 278772006 | 728838001 |
| UBERON:0006467 T11 segment of thoracic spinal cord | 278773001 | 728839009 |
| UBERON:0006468 T12 segment of thoracic spinal cord | 278774007 | 728840006 |
| UBERON:0006469 C1 segment of cervical spinal cord | 278754000 | 728821000 |
| UBERON:0006470 C8 segment of cervical spinal cord | 278761001 | 728828006 |
| UBERON:0006488 C3 segment of cervical spinal cord | 278756003 | 728823002 |
| UBERON:0006489 C2 segment of cervical spinal cord | 278755004 | 728822007 |
| UBERON:0006490 C4 segment of cervical spinal cord | 278757007 | 728824008 |
| UBERON:0006491 C5 segment of cervical spinal cord | 278758002 | 728825009 |
| UBERON:0006492 C6 segment of cervical spinal cord | 278759005 | 728826005 |
| UBERON:0006493 C7 segment of cervical spinal cord | 278760000 | 728827001 |
| UBERON:0006565 female urethral meatus | 279479008 | 728995001 |
| UBERON:0006568 hypothalamic nucleus | 279304003 | 728927002 |
| UBERON:0006574 pectinate line | 245445008 | 1336212006 |
| UBERON:0006608 corpus cavernosum clitoridis | 16657007 | 726880005 |
| UBERON:0006638 remnant of urachus | 89583000 | 727299003 |
| UBERON:0006651 appendix testis | 279601003 | 729051003 |
| UBERON:0006660 muscular coat | 86915006 | 727280007 |
| UBERON:0006664 greater palatine artery | 312163002 | 729927006 |
| UBERON:0006671 orbital fat pad | 363656009 | 732138001 |
| UBERON:0006676 muscularis mucosa | 370140002 | 730572008 |
| UBERON:0006686 spinal vein | 181376008 | 727612002 |
| UBERON:0006688 sublingual caruncle | 85139009 | 727265001 |
| UBERON:0006729 liver perisinusoidal space | 17779003 | 726886004 |
| UBERON:0006749 superior parathyroid gland | 245540001 | 728313002 |
| UBERON:0006755 inferior parathyroid gland | 245542009 | 728314008 |
| UBERON:0006770 apophysis | 65000005 | 727164007 |
| UBERON:0006804 reticular tissue | 57987007 | 727118002 |
| UBERON:0006812 mental foramen | 244686000 | 728071001 |
| UBERON:0006815 areolar connective tissue | 68477002 | 727182005 |
| UBERON:0006843 root of cranial nerve | 280161004 | 729255004 |
| UBERON:0006855 muscular coat of ureter | 3563003 | 726070007 |
| UBERON:0006914 squamous epithelium | 40118003 | 727011005 |
| UBERON:0006934 sensory epithelium | 309045006 | 729904003 |
| UBERON:0006956 buccal mucosa | 16811007 | 256682009 |
| UBERON:0007005 cardiogenic splanchnic mesoderm | 360387000 | 730161005 |
| UBERON:0007145 dome of diaphragm | 244940004 | 728084005 |
| UBERON:0007177 lamina propria of mucosa of colon | 113284008 | 727407005 |
| UBERON:0007178 muscularis mucosae of colon | 885000 | 726087009 |
| UBERON:0007188 mesothelium of serous pericardium | 67300002 | 727175006 |
| UBERON:0007239 tunica media of artery | 84300001 | 727261005 |
| UBERON:0007240 tunica adventitia of artery | 113261001 | 727406001 |
| UBERON:0007241 tunica adventitia of vein | 13202006 | 726857002 |
| UBERON:0007242 tunica intima of vein | 2436009 | 726091004 |
| UBERON:0007243 tunica media of vein | 42049001 | 727019007 |
| UBERON:0007252 intervertebral disk of cervical vertebra | 68818006 | 244571001 |
| UBERON:0007312 pudendal artery | 277968003 | 728807002 |
| UBERON:0007367 surface of tongue | 314870004 | 730149002 |
| UBERON:0007610 tibial artery | 181351007 | 727610005 |
| UBERON:0007619 limiting membrane of retina | 280667001 | 729480001 |
| UBERON:0007635 nucleus of medulla oblongata | 304943004 | 729762009 |
| UBERON:0007651 anatomical junction | 91833003 | 727326001 |
| UBERON:0007652 esophageal sphincter | 277765007 | 726799008 |
| UBERON:0007679 intersomitic vein | 361448009 | 730418004 |
| UBERON:0007703 spinothalamic tract | 280417000 | 729386008 |
| UBERON:0007799 mixed dentition | 245545006 | 728316005 |
| UBERON:0007838 spinal cord white commissure | 423957000 | 731380007 |
| UBERON:0007840 spinal cord dorsal white commissure | 424400007 | 731391000 |
| UBERON:0007846 dense regular connective tissue | 22560007 | 726906000 |
| UBERON:0008202 bone of hip region | 304907005 | 731787007 |
| UBERON:0008266 periodontal ligament | 245775004 | 728417002 |
| UBERON:0008267 left supracardinal vein | 361449001 | 730419007 |
| UBERON:0008281 tooth bud | 53301001 | 727087001 |
| UBERON:0008320 common penile artery | 282044005 | 731160001 |
| UBERON:0008338 plantar part of pes | 57999000 | 731075006 |
| UBERON:0008345 ileal epithelium | 47046000 | 727045003 |
| UBERON:0008346 duodenal epithelium | 66036002 | 727171002 |
| UBERON:0008427 transverse foramen of axis | 281221002 | 729550008 |
| UBERON:0008429 cervical vertebral foramen | 280833008 | 729500001 |
| UBERON:0008430 lumbar vertebral foramen | 280835001 | 729502009 |
| UBERON:0008432 thoracic vertebral foramen | 280834002 | 729501002 |
| UBERON:0008842 suspensory ligament of testis | 279592009 | 729048005 |
| UBERON:0008847 ovarian ligament | 279915004 | 729183006 |
| UBERON:0008857 stomach smooth muscle circular layer | 2746007 | 726093001 |
| UBERON:0008877 epidermal-dermal junction | 51025007 | 727074007 |
| UBERON:0008883 osteoid | 39365008 | 727005007 |
| UBERON:0008930 somatosensory cortex | 279252006 | 728915000 |
| UBERON:0008969 dental follicle | 110975002 | 727402004 |
| UBERON:0008977 pes anserinus of tibia | 360767004 | 730231007 |
| UBERON:0008987 renal parenchyma | 29704000 | 362213001 |
| UBERON:0008992 chorion frondosum | 37333001 | 257341007 |
| UBERON:0008993 habenular nucleus | 279303009 | 1186706004 |
| UBERON:0008995 nucleus of cerebellar nuclear complex | 279220006 | 728908008 |
| UBERON:0009000 ischial spine | 18074002 | 182042005 |
| UBERON:0009006 deep inguinal lymph node | 65266007 | 731080002 |
| UBERON:0009007 superficial inguinal lymph node | 113340006 | 245370007 |
| UBERON:0009009 carotid sinus nerve | 50624003 | 727072006 |
| UBERON:0009013 white fibrocartilage | 3008003 | 726063007 |
| UBERON:0009016 ciliary stroma | 280868008 | 729504005 |
| UBERON:0009024 adrenal gland X zone | 24306004 | 730822004 |
| UBERON:0009025 gastroepiploic artery | 261401008 | 728517000 |
| UBERON:0009026 iliac circumflex artery | 244327004 | 727933009 |
| UBERON:0009029 pudendal vein | 395225000 | 730603005 |
| UBERON:0009129 right atrium endocardium | 3194006 | 726828001 |
| UBERON:0009130 dorsal meso-duodenum | 361433003 | 730404006 |
| UBERON:0009133 pleuroperitoneal membrane | 361429005 | 730400002 |
| UBERON:0009138 right common cardinal vein | 361507009 | 730467002 |
| UBERON:0009139 right posterior cardinal vein | 361505001 | 730465005 |
| UBERON:0009140 right subcardinal vein | 361452009 | 730421002 |
| UBERON:0009471 dorsum of tongue | 66938003 | 362093007 |
| UBERON:0009552 distal segment of manual digit | 312543003 | 1259254002 |
| UBERON:0009646 lumbar sympathetic nerve trunk | 280534006 | 729420003 |
| UBERON:0009647 tympanic membrane epithelium | 70839004 | 727196004 |
| UBERON:0009661 midbrain nucleus | 279285003 | 728922008 |
| UBERON:0009668 ventral mesentery | 361430000 | 730401003 |
| UBERON:0009746 head fold of embryonic disc | 361453004 | 730422009 |
| UBERON:0009747 tail fold of embryonic disc | 361439004 | 730410006 |
| UBERON:0009758 abdominal ganglion | 280508003 | 729404008 |
| UBERON:0009769 left common cardinal vein | 361506000 | 730466006 |
| UBERON:0009772 right anterior cardinal vein | 361503008 | 730463003 |
| UBERON:0009859 endosteum | 57487002 | 727114000 |
| UBERON:0009916 wall of ureter | 279397004 | 728950008 |
| UBERON:0009973 ureterovesical junction | 261187001 | 728515008 |
| UBERON:0009980 condyle of femur | 304912006 | 729742001 |
| UBERON:0010020 tubotympanic recess epithelium | 361516008 | 730476009 |
| UBERON:0010034 copula linguae | 361424000 | 730395003 |
| UBERON:0010052 mucosa of dorsum of tongue | 245835003 | 728453000 |
| UBERON:0010057 hypopharyngeal eminence | 361420009 | 730391007 |
| UBERON:0010069 outer epithelial layer of tympanic membrane | 39725007 | 727009001 |
| UBERON:0010070 intermediate layer of tympanic membrane | 44692008 | 727031009 |
| UBERON:0010161 lumen of blood vessel | 91747007 | 727322004 |
| UBERON:0010260 umbilical blood vessel | 408728001 | 731279007 |
| UBERON:0010279 pericardial sinus | 314273005 | 730058007 |
| UBERON:0010287 motor root of facial nerve | 280191009 | 729266006 |
| UBERON:0010307 conjunctival fornix | 276831007 | 731125007 |
| UBERON:0010361 synostosis | 1216008 | 726088004 |
| UBERON:0010372 uncinate process of ethmoid | 306373001 | 729830000 |
| UBERON:0010389 pterygoid bone | 415639001 | 731289006 |
| UBERON:0010467 teres muscle | 277440006 | 728757000 |
| UBERON:0010912 subdivision of skeleton | 129140006 | 24201007 |
| UBERON:0010926 lateral thyrohyoid ligament | 279555009 | 729032009 |
| UBERON:0010938 muscle belly | 29823001 | 726946006 |
| UBERON:0010940 muscle of digastric group | 360772008 | 730233005 |
| UBERON:0010947 occipitalis | 21405000 | 368681009 |
| UBERON:0011078 endolymphatic space | 279856000 | 729157001 |
| UBERON:0011124 xiphisternal joint | 118923007 | 730848007 |
| UBERON:0011124 xiphisternal joint | 118924001 | 730849004 |
| UBERON:0011131 intermetacarpal joint | 303065007 | 729622003 |
| UBERON:0011289 pharyngobasilar fascia | 16675008 | 730818009 |
| UBERON:0011298 submucosa of fallopian tube | 245489008 | 728305003 |
| UBERON:0011316 nerve to stylohyoid from facial nerve | 89590005 | 727300006 |
| UBERON:0011317 nerve to stylopharyngeus from glossopharyngeal nerve | 280294008 | 729320004 |
| UBERON:0011320 ligament of temporomandibular joint | 127861009 | 727459004 |
| UBERON:0011322 mylohyoid nerve | 280269007 | 729304009 |
| UBERON:0011370 transverse process of atlas | 181895009 | 727681004 |
| UBERON:0011392 blood vessel internal elastic membrane | 86405007 | 727275003 |
| UBERON:0011532 female pubococcygeus muscle | 208282000 | 730858006 |
| UBERON:0011565 lumen of gastrointestinal system | 432899004 | 731431003 |
| UBERON:0011624 superior horn of thyroid cartilage | 279520007 | 729014009 |
| UBERON:0011625 inferior horn of thyroid cartilage | 279521006 | 729015005 |
| UBERON:0011766 left recurrent laryngeal nerve | 280300006 | 1268452009 |
| UBERON:0011767 right recurrent laryngeal nerve | 280299003 | 1268453004 |
| UBERON:0011824 fibrous connective tissue | 363130003 | 730570000 |
| UBERON:0011847 acinus of parotid gland | 46926004 | 727043005 |
| UBERON:0011895 endomysium | 91739007 | 727321006 |
| UBERON:0011900 perimysium | 63406008 | 727151006 |
| UBERON:0011970 talofibular ligament | 244649001 | 724043003 |
| UBERON:0011973 epiphysis of phalanx of pes | 314621001 | 730113003 |
| UBERON:0011974 epiphysis of proximal phalanx of pes | 280047006 | 729224005 |
| UBERON:0011975 epiphysis of middle phalanx of pes | 280048001 | 729225006 |
| UBERON:0011976 epiphysis of distal phalanx of pes | 280049009 | 729226007 |
| UBERON:0011977 epiphysis of proximal phalanx of manus | 280044004 | 729221002 |
| UBERON:0011978 epiphysis of middle phalanx of manus | 280045003 | 729222009 |
| UBERON:0011979 epiphysis of distal phalanx of manus | 280046002 | 729223004 |
| UBERON:0012110 frontal process of zygomatic bone | 116353002 | 727413001 |
| UBERON:0012117 lumen of nutrient foramen | 29288001 | 726941001 |
| UBERON:0012167 buccal fat pad | 25930004 | 726921006 |
| UBERON:0012175 acoustico-facial VII-VIII ganglion complex | 361514006 | 730474007 |
| UBERON:0012241 male urethral meatus | 279478000 | 728994002 |
| UBERON:0012297 male urethral crest | 279470007 | 728989002 |
| UBERON:0012298 female urethral crest | 279471006 | 728990006 |
| UBERON:0012314 embryonic facial prominence | 89066004 | 362861000 |
| UBERON:0012374 subserosal plexus | 110699000 | 727399000 |
| UBERON:0012375 subserosa | 2255006 | 726041003 |
| UBERON:0012376 retromolar triangle | 245830008 | 728448005 |
| UBERON:0012401 small intestine smooth muscle circular layer | 54658003 | 727095002 |
| UBERON:0012402 small intestine smooth muscle longitudinal layer | 59150006 | 727127001 |
| UBERON:0012450 Meissner's corpuscle | 41421000 | 730828000 |
| UBERON:0012451 sensory receptor | 70402007 | 731985009 |
| UBERON:0012456 Merkel nerve ending | 9317004 | 730813000 |
| UBERON:0012457 Ruffini nerve ending | 53140000 | 730830003 |
| UBERON:0012477 dorsal part of neck | 304036007 | 362654002 |
| UBERON:0012494 muscularis mucosae of duodenum | 37457002 | 726993004 |
| UBERON:0012497 muscularis mucosae of rectum | 53420003 | 727088006 |
| UBERON:0012498 serosa of appendix | 22488003 | 726905001 |
| UBERON:0012504 adventitia of esophagus | 85950006 | 726784008 |
| UBERON:0012650 gastroduodenal junction | 264014000 | 728631005 |
| UBERON:0013118 sulcus of brain | 279337001 | 728936003 |
| UBERON:0013124 left posterior cardinal vein | 361504002 | 730464009 |
| UBERON:0013125 left subcardinal vein | 361451002 | 730420001 |
| UBERON:0013142 soleal vein | 397427005 | 730617001 |
| UBERON:0013148 early midbrain vesicle | 361481005 | 730444004 |
| UBERON:0013149 hindbrain vesicle | 361482003 | 730445003 |
| UBERON:0013150 future brain vesicle | 360409004 | 730166000 |
| UBERON:0013224 Ciaccio's gland | 278361003 | 728817007 |
| UBERON:0013227 crypt of Henle | 278362005 | 728818002 |
| UBERON:0013241 embryonic urethral groove | 361531004 | 730489003 |
| UBERON:0013485 crypt of Lieberkuhn of colon | 19447003 | 726890002 |
| UBERON:0013486 crypt of Lieberkuhn of appendix | 21512007 | 726898009 |
| UBERON:0013529 Brodmann area | 384717008 | 731034004 |
| UBERON:0013647 lateral pterygoid nerve | 48852002 | 727060000 |
| UBERON:0013682 peripheral region of retina | 264141008 | 728657008 |
| UBERON:0013685 foramen of skull | 276742007 | 728745009 |
| UBERON:0013754 integumentary system layer | 314820002 | 730140003 |
| UBERON:0013766 epicanthal fold | 74824007 | 731703008 |
| UBERON:0013768 great vessel of heart | 304066000 | 729723000 |
| UBERON:0014380 flexor digitorum brevis muscle | 79490000 | 727244007 |
| UBERON:0014430 sciatic notch | 360956007 | 730326008 |
| UBERON:0014444 pubic ramus | 182026003 | 727712007 |
| UBERON:0014450 pretectal nucleus | 416164009 | 730655006 |
| UBERON:0014473 precentral fissure of cerebellum | 18716004 | 726889006 |
| UBERON:0014541 thoracic division of spinal cord central canal | 71118002 | 727197008 |
| UBERON:0014542 cervical division of cord spinal central canal | 280403009 | 729382005 |
| UBERON:0014543 lumbar division of spinal cord central canal | 280406001 | 729384006 |
| UBERON:0014615 accessory nerve root | 280187004 | 729265005 |
| UBERON:0014626 base of cochlear canal | 279778001 | 729124003 |
| UBERON:0014628 vestibular fissure of the cochlear canal | 279772000 | 729121006 |
| UBERON:0014630 ventral gray commissure of spinal cord | 88806005 | 727292007 |
| UBERON:0014631 dorsal gray commissure of spinal cord | 21169000 | 726896008 |
| UBERON:0014731 haversian canal | 3336003 | 730811003 |
| UBERON:0014881 distal epiphysis of distal phalanx of manual digit 1 | 182011000 | 727711000 |
| UBERON:0014882 distal epiphysis of distal phalanx of manual digit 2 | 263457005 | 728604007 |
| UBERON:0014883 distal epiphysis of distal phalanx of manual digit 3 | 263458000 | 728605008 |
| UBERON:0014884 distal epiphysis of distal phalanx of manual digit 4 | 263459008 | 728606009 |
| UBERON:0014885 distal epiphysis of distal phalanx of manual digit 5 | 263460003 | 728607000 |
| UBERON:0014886 distal epiphysis of distal phalanx of manual digit | 182006002 | 727707006 |
| UBERON:0014891 brainstem white matter | 360442003 | 730171007 |
| UBERON:0014931 periungual skin | 280418005 | 729387004 |
| UBERON:0014932 periventricular white matter | 37065005 | 726992009 |
| UBERON:0014933 periventricular gray matter | 89530008 | 727298006 |
| UBERON:0015117 lamina terminalis of cerebral hemisphere | 361483008 | 730446002 |
| UBERON:0015155 conjunctival space | 280957009 | 729538002 |
| UBERON:0015226 bulbar spiral septum | 361469006 | 730434001 |
| UBERON:0015472 tracheobronchial lymph node | 245341003 | 728267006 |
| UBERON:0015704 sagittal sinus | 244400002 | 727959007 |
| UBERON:0015881 internal iliac lymph node | 245357003 | 728274001 |
| UBERON:0015923 superficial parotid lymph node | 279141006 | 728899006 |
| UBERON:0015925 superficial intraparotid lymph node | 68339009 | 727179000 |
| UBERON:0016392 mastoid lymph node | 245328002 | 728262000 |
| UBERON:0016392 mastoid lymph node | 279143009 | 728901002 |
| UBERON:0016393 deep parotid lymph node | 279142004 | 728900001 |
| UBERON:0016416 anterior chest | 182331006 | 727751002 |
| UBERON:0016497 epicondyle of humerus | 272693008 | 728734006 |
| UBERON:0016634 premotor cortex | 90928005 | 730838005 |
| UBERON:0016930 ridge of tooth | 245699009 | 728367008 |
| UBERON:0016933 oblique ridge of tooth | 245701009 | 728369006 |
| UBERON:0016934 marginal ridge of tooth | 245700005 | 728368003 |
| UBERON:0016937 transverse marginal ridge of tooth | 245702002 | 728370007 |
| UBERON:0016938 mesial marginal ridge of tooth | 278475009 | 728819005 |
| UBERON:0016939 distal marginal ridge of tooth | 278476005 | 728820004 |
| UBERON:0018103 posterior fascicle of palatopharyngeus | 244801005 | 728079004 |
| UBERON:0018104 parafoveal part of retina | 264120002 | 728653007 |
| UBERON:0018105 perifoveal part of retina | 280617008 | 729463000 |
| UBERON:0018107 foveola of retina | 399857002 | 730624000 |
| UBERON:0018398 superior alveolar nerve | 280235006 | 729280004 |
| UBERON:0018412 vidian nerve | 280273005 | 729307002 |
| UBERON:0019190 mucous gland of lung | 88410004 | 727289008 |
| UBERON:0019199 lateral side of chest | 182332004 | 727752009 |
| UBERON:0019210 pole of lens | 280630009 | 729467004 |
| UBERON:0019243 skin crease | 280385004 | 729373004 |
| UBERON:0019246 palmar skin crease | 244159001 | 727879003 |
| UBERON:0019247 plantar skin crease | 244192007 | 727902007 |
| UBERON:0019303 occipital sulcus | 314148004 | 730020008 |
| UBERON:0022244 anterior orbital gyrus | 279196000 | 1359916007 |
| UBERON:0022297 palpebral branch of infra-orbital nerve | 280236007 | 729281000 |
| UBERON:0022301 long ciliary nerve | 280228003 | 729276009 |
| UBERON:0022302 short ciliary nerve | 417598000 | 730663007 |
| UBERON:0022358 placenta blood vessel | 280716005 | 729495004 |
| UBERON:0022361 lung field | 34922002 | 726980009 |
| UBERON:0022421 pontocerebellar tract | 360457005 | 730178001 |
| UBERON:0026586 vestibular canal | 279736007 | 729099003 |
| UBERON:0028194 spiral prominence of cochlear duct | 279843007 | 729149004 |
| UBERON:0034688 spermatic fascia | 279652001 | 729062003 |
| UBERON:0034712 yellow fibrocartilage | 1456008 | 726042005 |
| UBERON:0034725 pterygopalatine nerve | 58267004 | 727120004 |
| UBERON:0034765 glabella skin | 244083007 | 727840009 |
| UBERON:0034773 uncus of parahippocampal gyrus | 279213004 | 728905006 |
| UBERON:0034901 cervical sympathetic nerve trunk | 280533000 | 729419009 |
| UBERON:0034971 aortic body | 75061007 | 727219004 |
| UBERON:0034972 jugular body | 181381004 | 727613007 |
| UBERON:0034984 nerve to quadratus femoris | 280351000 | 729360003 |
| UBERON:0034988 tendon of obturator internus | 245172006 | 728193009 |
| UBERON:0035039 rectal artery | 277967008 | 728806006 |
| UBERON:0035079 deep intraparotid lymph node | 75040000 | 727218007 |
| UBERON:0035109 plantar nerve | 181074000 | 727582000 |
| UBERON:0035122 interincisive suture | 245781007 | 728418007 |
| UBERON:0035149 gingival epithelial attachment | 85036004 | 727264002 |
| UBERON:0035162 infraclavicular lymph node | 9659009 | 725600002 |
| UBERON:0035237 branch of internal carotid artery | 360629008 | 730223002 |
| UBERON:0035252 left subcostal vein | 361639006 | 1240434003 |
| UBERON:0035292 branch of posterior tibial artery | 314363005 | 730091003 |
| UBERON:0035304 branch of ulnar artery | 360551008 | 730208007 |
| UBERON:0035307 branch of vertebral artery | 360535000 | 730202008 |
| UBERON:0035341 posterior lobe of prostate | 66012001 | 727169002 |
| UBERON:0035350 branch of middle cerebral artery | 314302003 | 730069005 |
| UBERON:0035359 branch of brachial artery | 360543005 | 730206006 |
| UBERON:0035380 branch of anterior cerebral artery | 314304002 | 730071005 |
| UBERON:0035386 space of Mall | 89510009 | 727297001 |
| UBERON:0035395 branch of left coronary artery | 244248004 | 727918001 |
| UBERON:0035398 branch of external carotid artery | 244216003 | 727911007 |
| UBERON:0035416 diaphragma sellae | 32967008 | 730824003 |
| UBERON:0035438 mucoid tissue | 61115003 | 727134004 |
| UBERON:0035468 costodiaphragmatic recess | 46297007 | 1297172001 |
| UBERON:0035474 right subcostal vein | 361638003 | 730541009 |
| UBERON:0035480 surface of prostate | 279694003 | 729083009 |
| UBERON:0035489 branch of basilar artery | 360537008 | 730203003 |
| UBERON:0035501 unencapsulated tactile receptor | 38005009 | 726997003 |
| UBERON:0035508 branch of posterior cerebral artery | 314305001 | 730072003 |
| UBERON:0035642 laryngeal nerve | 307013006 | 729850001 |
| UBERON:0035769 mesenteric ganglion | 314754005 | 730134005 |
| UBERON:0035771 mesenteric plexus | 314752009 | 730132009 |
| UBERON:0035814 pericardial fat | 42267001 | 727020001 |
| UBERON:0035845 enthesis | 410054009 | 725969002 |
| UBERON:0035924 radiation of corpus callosum | 279308000 | 728928007 |
| UBERON:0035925 central sulcus of insula | 279348008 | 728938002 |
| UBERON:0035927 sulcus of parietal lobe | 314145001 | 730019002 |
| UBERON:0036143 meningeal branch of mandibular nerve | 280249002 | 730976003 |
| UBERON:0036264 zygomaticotemporal nerve | 280243001 | 729285009 |
| UBERON:0036265 conjunctival papilla | 280681004 | 729486007 |
| UBERON:0036266 pars interarticularis of vertebra | 705098005 | 731518006 |
| UBERON:0036267 vulval vein | 279975006 | 731142001 |
| UBERON:0036269 penis blood vessel | 363673006 | 731857006 |
| UBERON:0036301 vasculature of spleen | 297287005 | 731758006 |
| UBERON:1000023 spleen pulp | 13515001 | 726860009 |
| UBERON:1200342 bone marrow of skull | 712962003 | 731610008 |
- Lingua principale
- Emacs Lisp
- Stelle
- 166
- Fork
- 42
- Merge medio
- 23h 31m
- PR unite (30g)
- 10
Preparare l'ambiente
- Nessun Dockerfile né file Docker Compose
- Nessun modello di pull request
- Leggi la guida per i contributori
Come iniziare
- Leggi tutta la issue e poi la guida ai contributi del progetto.
- Commenta sulla issue per dire che te ne occupi tu — evita che due persone facciano lo stesso lavoro.
- Fai un fork del repository e lavora su un branch.
- Apri una pull request che faccia riferimento al numero della issue.
Altre issue di obophenotype/uberon
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uberon-classhierarchy
Difficoltà 2/5 1-3 ore Idoneità per principianti 62/100
obophenotype/uberon#3808 · 5 commenti ·
I maintainer di solito rispondono entro 1 giorno
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uberon-classhierarchy
Difficoltà 2/5 1-3 ore Idoneità per principianti 62/100
obophenotype/uberon#3800 ·
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Difficoltà 2/5 1-3 ore Idoneità per principianti 65/100
obophenotype/uberon#3785 ·
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obophenotype/uberon#3780 ·
I maintainer di solito rispondono entro 1 giorno
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State publicly where specimen / sample-type terms belong (organoid, cell culture, PBMC, biopsy)Aperta
Difficoltà 2/5 1-3 ore Idoneità per principianti 68/100
obophenotype/uberon#3766 ·
I maintainer di solito rispondono entro 1 giorno
Tutte le issue di obophenotype/uberon
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