nmfs-ost/ss3-source-code

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The source code for Stock Synthesis (SS3).

Étoiles: 46
Forks: 19
Issues débutants ouvertes: 0
Issues indexées: 44

Langage dominant: C++
Licence: CC0-1.0
Dernier push GitHub: 28/7/2026
Dernière indexation: 19/9/2026
Guide de contribution: Guide de contribution
Code de conduite: Code de conduite
Labels débutants: Aucun label débutant indexé
Métriques de merge des PR: Aucune PR mergée en 30 j

Accessible aux débutants Tout

Ouverte Toutes

need warning and improved logic for generalized sizecomp Ouverte

composition in progress

nmfs-ost/ss3-source-code#751 · 1 commentaire · 1 personne assignée · Ouverte le 2/2/2026
[Feature]: Add standard errors for area-specific quantities Ouverte

area & movement

nmfs-ost/ss3-source-code#731 · 3 commentaires · 1 personne assignée · Ouverte le 16/9/2025
[Feature]: Create a basic report list that could serve as better starting configuration for customization Ouverte

misc. output

nmfs-ost/ss3-source-code#723 · 1 personne assignée · Ouverte le 9/9/2025
[Feature]: restrict biology output using the use_morph(g) flag Ouverte

biology misc. output ongoing

nmfs-ost/ss3-source-code#702 · 1 personne assignée · Ouverte le 18/8/2025
[Feature]: mean vs median recruitment when using SCAA option Ouverte

recruitment

nmfs-ost/ss3-source-code#696 · 1 personne assignée · Ouverte le 31/7/2025
[Feature]: dedicated option for timesteps as continuous seasons Ouverte

misc. input recruitment wishlist

nmfs-ost/ss3-source-code#660 · 1 personne assignée · Ouverte le 17/3/2025
[Feature]: Implement calculation of effective degrees of freedom Ouverte

in progress new request statistics wishlist

nmfs-ost/ss3-source-code#651 · 13 commentaires · 3 personnes assignées · Ouverte le 13/1/2025
[Refactor]: bio_yr and bio_t_base are little used and should be replaceable Ouverte

misc. internal calc quick

nmfs-ost/ss3-source-code#626 · 1 personne assignée · Ouverte le 4/10/2024
[Feature]: Cohort growth deviation added to Linf (or L2) Ouverte

EPIC:GROWTH_M25 growth wishlist

nmfs-ost/ss3-source-code#599 · 1 commentaire · 1 personne assignée · Ouverte le 14/5/2024
[Bug]: "inf" value in bootstrap of mean size-at-age data for ages with sample size 0 Ouverte

bug misc. output quick

nmfs-ost/ss3-source-code#598 · 1 personne assignée · Ouverte le 2/5/2024
[Feature]: Mean recruitment adjustment Ouverte

benchmark - MSY in progress recruitment

nmfs-ost/ss3-source-code#594 · 17 commentaires · 2 personnes assignées · Ouverte le 26/4/2024
[Feature]: Revise recdev_bias adjustment to be a customizable list of line segments Ouverte

recruitment

nmfs-ost/ss3-source-code#588 · 1 personne assignée · Ouverte le 17/4/2024
[Refactor]: create function for t=f(y,s) Ouverte

misc. internal calc quick

nmfs-ost/ss3-source-code#578 · 1 personne assignée · Ouverte le 11/3/2024
[Feature]: add discard body weights to wtatage.ss Ouverte

discard & retention duplicate wishlist

nmfs-ost/ss3-source-code#575 · 1 commentaire · 1 personne assignée · Ouverte le 27/2/2024
[Refactor]: DM for age discard Ouverte

discard & retention

nmfs-ost/ss3-source-code#573 · 1 personne assignée · Ouverte le 22/2/2024
[Bug]: crash when do_recdev = 0 is combined with SRR option 7 (but work-around is available) Ouverte

recruitment

nmfs-ost/ss3-source-code#560 · 1 personne assignée · Ouverte le 1/2/2024
[Feature]: Apply the depletion survey (option 34) with an initial year that is not unfished Ouverte

nmfs-ost/ss3-source-code#529 · 5 commentaires · 1 personne assignée · Ouverte le 14/11/2023
[Feature]: update dynamic Bzero to work with recdev options 3&4 Ouverte

misc. internal calc recruitment

nmfs-ost/ss3-source-code#507 · 1 personne assignée · Ouverte le 26/9/2023
[Feature]: add option to input matrix of M by year & age Ouverte

natural mortality wishlist

nmfs-ost/ss3-source-code#503 · 1 personne assignée · Ouverte le 19/9/2023
[Feature]: Add generalized gamma index likelihood Ouverte

statistics survey_&_Q wishlist

nmfs-ost/ss3-source-code#497 · 16 commentaires · 3 personnes assignées · Ouverte le 18/8/2023
[Feature]: Add capability for seasonal offset in a CPUE catchability Ouverte

duplicate new request survey_&_Q time-vary parm wishlist

nmfs-ost/ss3-source-code#481 · 1 personne assignée · Ouverte le 21/7/2023
[Feature]: Add age range option to 2DAR selectivity Ouverte

new request selectivity

nmfs-ost/ss3-source-code#461 · 3 personnes assignées · Ouverte le 2/6/2023
[Feature]: Option to omit age_error definitions Ouverte

composition new request quick

nmfs-ost/ss3-source-code#459 · 2 personnes assignées · Ouverte le 1/6/2023
[Feature]: add suggestion to warning files for F_method 2 or 3 to nudge users towards F_method 4 Ouverte

fishing mortality new request quick warnings

nmfs-ost/ss3-source-code#445 · 2 personnes assignées · Ouverte le 18/5/2023
[Feature]: Include MSY options selected in Report.sso Ouverte

misc. output new request question

nmfs-ost/ss3-source-code#294 · 2 commentaires · 2 personnes assignées · Ouverte le 19/4/2022
[Feature]: Allow survey index to be either total or retained catch Ouverte

new request wishlist

nmfs-ost/ss3-source-code#275 · 1 commentaire · 1 personne assignée · Ouverte le 16/3/2022
[Feature]: Multivariate-Tweedie for age/length compositional likelihood Ouverte

composition Epic: Data weighting improvement FIMS in progress statistics wishlist

nmfs-ost/ss3-source-code#266 · 34 commentaires · 1 personne assignée · Ouverte le 7/3/2022
[Feature]: Report forecast catch with and without 40:10 adjustment (or equivalent) Ouverte

forecast misc. output new request wishlist

nmfs-ost/ss3-source-code#193 · 3 commentaires · 1 personne assignée · Ouverte le 12/8/2021
[Feature]: Output body weight-at-age of retained and discarded fish when retention function is used Ouverte

code review misc. output wishlist

nmfs-ost/ss3-source-code#81 · 1 commentaire · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Develop design matrix approach to share movement parameters Ouverte

area & movement Epic: Improve movement wishlist

nmfs-ost/ss3-source-code#60 · 3 commentaires · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Equilibrium growth for equilibrium calculations Ouverte

benchmark - MSY Epic: Equilibrium calcs hard wishlist

nmfs-ost/ss3-source-code#58 · 2 commentaires · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Seasonal effects for catchability and selectivity Ouverte

duplicate survey_&_Q time-vary parm wishlist

nmfs-ost/ss3-source-code#53 · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Condition factor Ouverte

biology wishlist

nmfs-ost/ss3-source-code#50 · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Movement is fxn of mean length-at-age Ouverte

area & movement Epic: Improve movement wishlist

nmfs-ost/ss3-source-code#49 · 1 commentaire · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Virtual availability Ouverte

area & movement hard wishlist

nmfs-ost/ss3-source-code#39 · 1 commentaire · 1 personne assignée · Ouverte le 5/11/2020
Implementing new recruitment dev vector approach Ouverte

essay topic recruitment

nmfs-ost/ss3-source-code#37 · 13 commentaires · 1 personne assignée · Ouverte le 5/11/2020
[Refactor]: Dynamic spawner-recruitment logic in benchmarks and projections Ouverte

Epic: Equilibrium calcs on hold recruitment wishlist

nmfs-ost/ss3-source-code#36 · 6 commentaires · 1 personne assignée · Ouverte le 5/11/2020
Document and sim test recruitment dev_vector options Ouverte

essay topic needs testing recruitment

nmfs-ost/ss3-source-code#29 · 6 commentaires · 1 personne assignée · Ouverte le 5/11/2020
[Bug]: Richards growth coefficient range Ouverte

bug EPIC:GROWTH_M25 growth question

nmfs-ost/ss3-source-code#23 · 2 commentaires · 1 personne assignée · Ouverte le 5/11/2020
review implementation of parameter random effects Ouverte

Epic: Improve parameters essay topic needs testing time-vary parm

nmfs-ost/ss3-source-code#20 · 16 commentaires · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Input prior on derived selectivity Ouverte

Epic: Improve parameters selectivity statistics wishlist

nmfs-ost/ss3-source-code#13 · 3 commentaires · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Add other options to _CV_Growth_Pattern for log(SD) Ouverte

EPIC:GROWTH_M25 growth wishlist

nmfs-ost/ss3-source-code#9 · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Report more info on deviations to PARAMETERS section of Report.sso Ouverte

Epic: Improve parameters misc. output wishlist

nmfs-ost/ss3-source-code#8 · 1 commentaire · 1 personne assignée · Ouverte le 5/11/2020
[Feature]: Year-specific MSY Ouverte

benchmark - MSY Epic: Improve bmarks/fcast hard wishlist

nmfs-ost/ss3-source-code#3 · 1 personne assignée · Ouverte le 5/11/2020

nmfs-ost/ss3-source-code

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