Prepocessing does not work

Start with the repository's documented preprocess.sh invocation and inspect how that script is installed or exposed in the Python environment. Reproduce the command and the SLURM example using the metagenomic FASTQ inputs; done means the command can locate and run preprocess.sh without the reported command-not-found error.

Hello, I was trying to use your tool for checking metagenomics fastq.gz files. I am working in HPC, so I created a new environment where I downloaded conda install preprocessing -c Fasnicar. The problem is when I send the command you put parallel -j NCPU 'preprocess.sh -i {} [ other parameters]' ::: ls input_folder

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Tange, O. (2024, Sept. 22). GNU Parallel 20240922 ('Gold Apollo AR924').
Zenodo. https://doi.org/10.5281/zenodo.13826092

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/usr/bin/bash: preprocess.sh: command not found

and even if I go into the preprocess folder, where I see the file, I get the same error.

I created a sh job I :

#!/bin/bash 
#SBATCH --account=francesconimichela
#SBATCH --nodes=1
#SBATCH --mem=200G
#SBATCH --ntasks=100
python /share/project9/home/francesconimichela/preprocessing/preprocess.sh -i {} ::: /share/project9/home/francesconimichela/concat_I3lung/*

but again, it doesn't work. I can't figure out how to make the command go.
I apologize if this is a silly question or if I didn't explain myself well but there are really few explanations

Michela