Repositories

tseemann Repositories

131 unterstützte Repositories

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tseemann/seekaPerl

Get microbial sequence data easier and faster

Letzter Commit 07.11.2019

 (28 Stars) (4 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/seerC++

sequence element (kmer) enrichment analysis

Letzter Commit 23.03.2017

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/seqtkC

Toolkit for processing sequences in FASTA/Q formats

Letzter Commit 06.10.2019

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/shovillPerl

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

Letzter Commit 13.12.2025

 (261 Stars) (48 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/simuvar

Simulate variants of bacterial genomes for testing SNP callers

Letzter Commit 17.07.2017

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/sixessShell

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Letzter Commit 24.04.2018

 (25 Stars) (2 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/skrilla

It ain't all about skrilla

Letzter Commit 22.05.2020

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/skrofulaPerl

Yet another M.tuberculosis typing and resistance tool, but for the impatient (not in-patient)

Letzter Commit 02.03.2020

 (5 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/snasmPerl

Assembly based core SNP alignments

Letzter Commit 10.10.2025

 (8 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/snippaPerl

Experimental modular bacterial SNP calling pipeline

Letzter Commit 01.04.2018

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/snippyPerl

:scissors: :zap: Rapid haploid variant calling and core genome alignment

Letzter Commit 12.12.2025

 (586 Stars) (123 Forks) (4 indexierte Issues) (4 offene good first issues)
tseemann/snp-distsC

Pairwise SNP distance matrix from a FASTA sequence alignment

Letzter Commit 31.12.2025

 (155 Stars) (32 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/snp-sitesC

Finds SNP sites from a multi-FASTA alignment file

Letzter Commit 09.06.2020

 (5 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/spadesC++

SPAdes Genome Assembler http://cab.spbu.ru/spades

Letzter Commit 30.05.2016

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/spekkiPython

Species prediction from NGS reads

Letzter Commit 29.08.2017

 (5 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/spuddyPerl

🥔🐶 Species detection buddy

Letzter Commit 29.01.2026

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/sweet-fxC

FastQ/FastA NGS read file tools

Letzter Commit 04.11.2012

 (0 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/tabixppC++

C++ wrapper to tabix indexer

Letzter Commit 13.03.2015

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/tiptoftPython

Predict plasmids from uncorrected long read data

Letzter Commit 27.09.2018

 (0 Stars) (2 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/trenchaPerl

Normalize VCF depth for Illumina GC bias

Letzter Commit 25.02.2020

 (7 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)