Repositories

tseemann Repositories

131 unterstützte Repositories

Repositories mit indexierten Issues anzeigen
tseemann/abricatePerl

:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes

Letzter Commit 03.04.2026

 (496 Stars) (105 Forks) (1 indexiertes Issue) (1 offenes good first issue)
tseemann/amplikatePerl

📢🎯 Generic typing tool from amplicons and/or in silico PCR

Letzter Commit 16.10.2019

 (0 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/angusR

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

Letzter Commit 20.08.2015

 (0 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/anthrakks

Distinguish Bacillus cereus and biovar anthracis (anthrax)

Letzter Commit 02.09.2021

 (3 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/any2fastaPerl

Convert various sequence formats to FASTA

Letzter Commit 30.12.2025

 (148 Stars) (18 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/apcPerl

(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join

Letzter Commit 08.04.2015

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/arborkart

Phylogenomic trees with maps for the web

Letzter Commit 27.03.2020

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/artic-ncov2019

ARTIC nanopore protocol for nCoV2019 novel coronavirus

Letzter Commit 24.03.2020

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/asmngs18

ASMNGS18 - 2018 Conference Details

Letzter Commit 22.09.2018

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/assembillShell

Simple script to clip, assemble, tile and annotate a bacterial genome from Illumina reads

Letzter Commit 19.08.2014

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/atlasPython

atlas

Letzter Commit 09.03.2017

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/austrakka-public-siteTypeScript

Letzter Commit 13.06.2025

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/babykraken

👶🦑 Very small Kraken2 database for bundling with pipelines

Letzter Commit 19.08.2019

 (4 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/barrnapPerl

:microscope: :leo: Microbial RNA annotation

Letzter Commit 12.04.2026

 (296 Stars) (46 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/berokkaPerl

🍊 💫 Trim, circularise and orient long read bacterial genome assemblies

Letzter Commit 07.09.2019

 (27 Stars) (3 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/bioconda-recipesShell

Conda recipes for the bioconda channel.

Letzter Commit 01.05.2026

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/bioinfo-scriptsPerl

Collection of bioinformatics utility scripts, mostly written in Bioperl

Letzter Commit 12.08.2017

 (3 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/bng-toolsPerl

Useful post-processing scripts for BRATNextGen output data

Letzter Commit 07.08.2014

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/bowkaster

cgMLST from FASTQ reads

Letzter Commit 26.04.2018

 (4 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/bwaC

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

Letzter Commit 28.04.2016

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)