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tseemann Repositories

131 unterstützte Repositories

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tseemann/.github

Summary of the torstyverse bioinformatics softwate suite

Letzter Commit 8. Feb. 2026

 (5 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/2013-caltech-workshopPython

Letzter Commit 31. Okt. 2013

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/ClonalFrameMLC++

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

Letzter Commit 27. Aug. 2019

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/FriPanJavaScript

Interactive, web tool for exploring pan-genome of bacterial strains

Letzter Commit 21. März 2017

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/GraphAlignerC++

Letzter Commit 7. Okt. 2019

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/MUMmer3C++

MUMmer3

Letzter Commit 30. Apr. 2013

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/MapCallerC

MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes

Letzter Commit 16. Feb. 2020

 (0 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/MashC++

Fast genome and metagenome distance estimation using MinHash

Letzter Commit 18. Okt. 2019

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/PEARC

Pair-End AssembeR

Letzter Commit 16. Apr. 2014

 (35 Stars) (44 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/PEATC++

An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.

Letzter Commit 4. März 2015

 (0 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/PIRATEPerl

A toolbox for pangenome analysis and threshold evaluation.

Letzter Commit 30. Sept. 2019

 (2 Stars) (2 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/ProdigalC

Prodigal Gene Prediction Software

Letzter Commit 18. Feb. 2015

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/RoaryPerl

Rapid large-scale prokaryote pan genome analysis

Letzter Commit 1. Nov. 2019

 (3 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/SeqSeroPython

Salmonella serotyping from genome sequencing data

Letzter Commit 3. Sept. 2018

 (1 Star) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/SpartanBioinformaticsHTML

Letzter Commit 27. Mai 2019

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/TBProfilerPython

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

Letzter Commit 5. März 2020

 (2 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/TOASTShell

The Other Alternative Sequence Type

Letzter Commit 27. Feb. 2026

 (1 Star) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/TZMDPerl

Letzter Commit 10. Okt. 2018

 (0 Stars) (0 Forks) (0 indexierte Issues) (0 offene good first issues)
tseemann/UnicyclerC++

hybrid assembly pipeline for bacterial genomes

Letzter Commit 21. Okt. 2019

 (0 Stars) (1 Fork) (0 indexierte Issues) (0 offene good first issues)
tseemann/VelvetOptimiserPerl

:chart_with_upwards_trend: Automatically optimise three of Velvet's assembly parameters.

Letzter Commit 21. Dez. 2017

 (50 Stars) (17 Forks) (0 indexierte Issues) (0 offene good first issues)