bioepic-data/bervo

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• Which column names a root variable's axis order (Primary axes, Secondary axes)?

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  Difficulty 5/5 Over a week Newbie friendliness 15/100

  bioepic-data/bervo#161 · 1 comment · Opened Oct 8, 2026

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• Five rows whose label and definition disagree, left out of the #83 sweep

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  bioepic-data/bervo#160 · 1 comment · Opened Oct 8, 2026

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• Settle what value_types means before filling it on 1,645 variables

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  Difficulty 5/5 Over a week Newbie friendliness 10/100

  bioepic-data/bervo#159 · 1 comment · Opened Oct 8, 2026

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• Add Cumulative and Yearly to the 44 _CumYr variables

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  bioepic-data/bervo#158 · 1 comment · Opened Oct 8, 2026

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• Process hierarchy: Chemical transformation sits beside terms it covers; Erosion and Uptake sit under Concept

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  bioepic-data/bervo#157 · 1 comment · Opened Oct 8, 2026

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• Iron and aluminum hydroxide concepts: wrong synonyms, and one concept standing for three species

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  bioepic-data/bervo#156 · 1 comment · Opened Oct 8, 2026

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• Microbial gases transformation (BERVO:0000919, 0000920) is net microbial gas uptake

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  bioepic-data/bervo#155 · 1 comment · Opened Oct 8, 2026

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• Total adsorbed hydroxide transformation non-band (BERVO:0001732) is the whole adsorbed-species array

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  bioepic-data/bervo#154 · 1 comment · Opened Oct 8, 2026

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• Soil electrical conductivity (BERVO:0000916) is EcoSIM's per-column soil ion content

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  bioepic-data/bervo#153 · 1 comment · Opened Oct 8, 2026

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• Audit the 2025 mnemonic-ID ontology for terms missing from bervo-src.csv

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  Difficulty 5/5 Over a week Newbie friendliness 15/100

  bioepic-data/bervo#146 · 1 comment · Opened Oct 8, 2026

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• Remove or repair the dead root Makefile

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  bioepic-data/bervo#145 · 1 comment · Opened Oct 8, 2026

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• Total flux from fire (BERVO:0001053) is the oxygen flux but its label doesn't say so

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  bioepic-data/bervo#142 · Opened Oct 6, 2026

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• BERVO:0001273's label and definition describe sediment, not the adsorbed chemicals it measures

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  bioepic-data/bervo#136 · 1 comment · Opened Oct 6, 2026

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• Leaf rubisco and PEP carboxylase contents are fractions of leaf protein in EcoSIM, not per leaf mass

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  bioepic-data/bervo#132 · 2 comments · Opened Sep 25, 2026

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• NA in relationship columns is a bulk default, not a curated 'not applicable'

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  bioepic-data/bervo#127 · 1 comment · Opened Sep 25, 2026

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• Decide how the Partitioning concept is used, and restore it on BERVO:0001668

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  bioepic-data/bervo#125 · 1 comment · Opened Sep 25, 2026

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• Decide whether respiration variables measure carbon or carbon dioxide

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  bioepic-data/bervo#124 · 1 comment · Opened Sep 25, 2026

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• Add terms for soil classification systems

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  bioepic-data/bervo#120 · 1 comment · Opened Sep 24, 2026

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• Exchange capacities: charge units (ceq) vs amount (cmol)

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  bioepic-data/bervo#119 · 1 comment · Opened Sep 24, 2026

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• Soil coarse fraction: basis and size cut-off vary by domain

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  bioepic-data/bervo#118 · 1 comment · Opened Sep 24, 2026

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• Say that Wrack cover and litter cover are parts of Unvegetated cover

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  bioepic-data/bervo#113 · 1 comment · Opened Sep 24, 2026

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• Sort the 19 dimensionless Count rows into counts, indices, and durations

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  bioepic-data/bervo#112 · 1 comment · Opened Sep 24, 2026

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• 15 grid-cell totals are defined as concentrations

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  bioepic-data/bervo#109 · 1 comment · Opened Sep 24, 2026

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• Model categorical variables and the values they can take

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  bioepic-data/bervo#108 · 2 comments · Opened Sep 23, 2026

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• Link the existing variables to the quantity concepts added in #101

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  bioepic-data/bervo#105 · 1 comment · Opened Sep 23, 2026

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• just next-id should skip retired IDs and optionally fill open gaps

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  bioepic-data/bervo#103 · 1 comment · Opened Sep 23, 2026

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• Temperature change is parented as a kind of temperature

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  bioepic-data/bervo#102 · 1 comment · Opened Sep 23, 2026

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• How should the variables at saturation name that state?

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  bioepic-data/bervo#97 · 1 comment · Opened Sep 22, 2026

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• Mixed relation cells in the field capacity family: measurement_ofs on the log potentials, measured_ins on the irrigation thresholds

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  bioepic-data/bervo#96 · 1 comment · Opened Sep 22, 2026

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• Wrong or inconsistent has_units in the soil water retention rows

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  bioepic-data/bervo#95 · 1 comment · Opened Sep 22, 2026

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• Soil capillary pressure is defined as equal to the matric potential, and both rows claim the same EcoSIM slot

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  bioepic-data/bervo#93 · 1 comment · Opened Sep 22, 2026

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• Heat capacity and Heat content are parented as kinds of heat, not as properties of it

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  bioepic-data/bervo#91 · 1 comment · Opened Sep 22, 2026

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• Link the variable terms to the concepts added in September 2026

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  bioepic-data/bervo#83 · 1 comment · Opened Sep 21, 2026

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• Total soil nitrate and nitrite content names Nitrogen dioxide where it means Nitrite

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  bioepic-data/bervo#79 · 1 comment · Opened Sep 18, 2026

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• Should BERVO distinguish directly observed field values from calculated or modelled ones?

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  bioepic-data/bervo#78 · 1 comment · Opened Sep 18, 2026

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• Where should the constants live: under Variable, under Concept, or in the concept ID block?

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  bioepic-data/bervo#76 · 1 comment · Opened Sep 18, 2026

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• Snow volume in snowpack (water equivalent) and Water equivalent snowpack read as duplicates but are not

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  bioepic-data/bervo#67 · 1 comment · Opened Sep 17, 2026

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• Record chemical composition of compound terms, which #59 dropped as is-a edges

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  bioepic-data/bervo#60 · 1 comment · Opened Sep 3, 2026

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• Nothing checks the hand-written ROBOT template strings in AGENTS.md and SKILL.md against the CSV

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  bioepic-data/bervo#57 · 1 comment · Opened Aug 29, 2026

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• Verify the necromass claim in Microbial residual hydrolysis (BERVO:8000575) against EcoSIM

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  bioepic-data/bervo#53 · 1 comment · Opened Aug 28, 2026

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• Two pairs of near-duplicate concept terms, and the validator gap that hides them

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  bioepic-data/bervo#52 · 2 comments · Opened Aug 28, 2026

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• ROBOT heap setting in qc.yml is inert: ROBOT_ENV is passed as a make variable the Makefile never reads

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  bioepic-data/bervo#49 · 1 comment · Opened Aug 28, 2026

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• 6,947 junk rdf:resource="NA" axioms from NA sentinels in IRI-valued columns

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  bioepic-data/bervo#44 · Opened Aug 28, 2026

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• 80% of cross-references are emitted as broken relative IRIs (COMO and MIXS prefixes undeclared)

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  bioepic-data/bervo#43 · Opened Aug 28, 2026

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• Stale purl.obolibrary.org prefix makes three QC checks vacuous; ID ranges file omits the 8xxxxxx and 9xxxxxx blocks

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  bioepic-data/bervo#40 · Opened Aug 28, 2026

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• BERVO and EcoPortal

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  bioepic-data/bervo#28 · Opened Mar 12, 2026

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• include complete set of plant functional traits

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  bioepic-data/bervo#27 · 1 comment · Opened Jan 29, 2026

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• Get this ontology included in OLS

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  bioepic-data/bervo#17 · 1 comment · Opened Jul 1, 2025

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• Add license

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  bioepic-data/bervo#10 · Opened May 29, 2025

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• Clean up duplicate entries, definitions, and labels

  May be free again @jinyuntang claimed this 466 days ago, and no pull request is open. Open

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  bioepic-data/bervo#9 · 1 comment · 1 assignee · Opened May 29, 2025

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