One single config file
@grexor is already working on this.
Since Mar 4, 2025.
Assessment
This issue has not been assessed yet.
Description
Instead of having splicekit.config for specific splicekit setup, and config.yaml for having specific snakemake setup, join the two parameter files into a single yaml file, read by both snakemake and splicekit;
- Dominant language
- Python
- Stars
- 23
- Forks
- 4
- Avg merge
- 1m
- Merged PRs (30d)
- 2
Getting set up
- Ships a Dockerfile or Docker Compose file
- No pull request template
- No contributing guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
More from bedapub/splicekit
-
Multiple RNA-protein binding analysis on same datasetMay be free again @grexor claimed this 377 days ago, and no pull request is open. Open
-
Difficulty 5/5 Over a week Newbie friendliness 20/100
-
Running commands directly from Snakemake, not via splicekit shellMay be free again @grexor claimed this 579 days ago, and no pull request is open. Open
-
Dispersion plotMay be free again @grexor claimed this 594 days ago, and no pull request is open. Open
All issues in bedapub/splicekit
Similar issues
-
json_params_matcher fails on falsy top-level JSON primitives (0, False, "")Possibly taken @mayureshsonawane17 claimed this today. OpenWaiting for: Product Owner
Difficulty 2/5 1-3 hours Newbie friendliness 84/100
Maintainers usually reply within 5 days
-
Difficulty 2/5 1-3 hours Newbie friendliness 75/100
Maintainers usually reply within 1 day
-
Difficulty 1/5 Under an hour Newbie friendliness 88/100
bojieli/ai-agent-book#1169 ·
Maintainers usually reply within 1 day
-
priority:low ready-for-dev
Difficulty 2/5 1-3 hours Newbie friendliness 78/100
OpenHands/extensions#738 ·
Maintainers usually reply within 1 day
-
Difficulty 2/5 1-3 hours Newbie friendliness 85/100
micronaut-projects/micronaut-core#13677 ·
Maintainers usually reply within 1 day