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One single config file

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#94 1 comment 0 reactions 1 assignee View on GitHub

@grexor is already working on this.

Since Mar 4, 2025.

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This issue has not been assessed yet.

Description

Instead of having splicekit.config for specific splicekit setup, and config.yaml for having specific snakemake setup, join the two parameter files into a single yaml file, read by both snakemake and splicekit;

Dominant language
Python
Stars
23
Forks
4
Avg merge
1m
Merged PRs (30d)
2

Getting set up

  • Ships a Dockerfile or Docker Compose file
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  • No contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

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