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althonos repositories

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althonos/mininearPython

A NumPy port of the NEAR code for embedding protein sequences.

Last commit Sep 4, 2025

 (5 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/mocloPython

Modular cloning simulation with the MoClo framework in Python

Last commit May 3, 2022

 (12 stars) (2 forks) (0 indexed issues) (0 open good first issues)
althonos/muscleC++

Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.

Last commit Mar 30, 2022

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/nafcodecRust

Rust coder/decoder for Nucleotide Archival Format (NAF) files.

Last commit Jan 31, 2025

 (10 stars) (1 fork) (0 indexed issues) (0 open good first issues)
althonos/nanoset.pyPython

A memory-optimized wrapper for Python sets likely to be empty.

Last commit Oct 12, 2022

 (8 stars) (2 forks) (0 indexed issues) (0 open good first issues)
althonos/nomRust

Rust parser combinator framework

Last commit Feb 24, 2025

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/nvidia-gpu-appletPython

GUI for monitoring NVIDIA GPU (adapted from bbswitch-gui)

Last commit Feb 1, 2024

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/obofoundry.rsRust

Structures to deserialize OBO Foundry listings into.

Last commit Sep 10, 2024

 (1 star) (1 fork) (0 indexed issues) (0 open good first issues)
althonos/opalC++

SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)

Last commit Nov 16, 2015

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/opticaldiscRust

Read optical media filesystems with Rust

Last commit May 9, 2018

 (4 stars) (1 fork) (0 indexed issues) (0 open good first issues)
althonos/pacman-packagesShell

Last commit Dec 5, 2019

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/papasmurfRust

A Platform-Accelerated Package for Alignment-free SMURF analysis.

Last commit Mar 16, 2026

 (0 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/peptides.pyPython

Physicochemical properties, indices and descriptors for amino-acid sequences.

Last commit Sep 4, 2025

 (119 stars) (19 forks) (0 indexed issues) (0 open good first issues)
althonos/prontoPython

A Python frontend to (Open Biomedical) Ontologies.

Last commit Jan 13, 2026

 (263 stars) (47 forks) (0 indexed issues) (0 open good first issues)
althonos/property-cachedPython

A (better) decorator for caching properties in classes (forked from cached-property).

Last commit Jun 27, 2021

 (6 stars) (2 forks) (0 indexed issues) (0 open good first issues)
althonos/proteinogenicRust

Chemical structure generation for protein sequences as SMILES string.

Last commit Mar 1, 2022

 (4 stars) (1 fork) (0 indexed issues) (0 open good first issues)
althonos/pruefungRust

Redundancy checks in pure Rust

Last commit Jun 27, 2021

 (5 stars) (2 forks) (0 indexed issues) (0 open good first issues)
althonos/pubchem.rsRust

Rust data structures and client for the PubChem REST API

Last commit Feb 24, 2022

 (14 stars) (1 fork) (0 indexed issues) (0 open good first issues)
althonos/pyabricatePython

Pure Python port and interface to ABRicate, a tool for mass screening of contigs for antimicrobial resistance or virulence genes.

Last commit Nov 4, 2025

 (3 stars) (0 forks) (0 indexed issues) (0 open good first issues)
althonos/pyaragornCython

Cython bindings and Python interface to ARAGORN, a (t|mt|tm)RNA gene finder.

Last commit Mar 7, 2026

 (10 stars) (1 fork) (0 indexed issues) (0 open good first issues)