Owner
OHDSI
82 indexed repositories · View on GitHub
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CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
HTML · 1098 stars
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Vocabulary-v5.0
Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
PLpgSQL · 275 stars
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WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an E...
Java · 227 stars
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PatientLevelPrediction
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
R · 225 stars
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DataQualityDashboard
A tool to help improve data quality standards in observational data science.
JavaScript · 192 stars
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WebAPI
OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
Java · 153 stars
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CohortMethod
An R package for performing new-user cohort studies in an observational database in the OMOP Common Data Model.
R · 93 stars
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Broadsea
Broadsea deploys the core OHDSI technology stack (Atlas & R Hades), using cross-platform Docker container technology.
R · 91 stars
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SqlRender
This is an R package and Java library for rendering parameterized SQL, and translating it to different SQL dialects.
R · 89 stars
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Athena
Web application for distributing and browsing the Standardized Vocabularies for all instances of an OMOP CDM
Java · 79 stars
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FeatureExtraction
An R package for generating features (covariates) for a cohort using data in the Common Data Model.
R · 75 stars
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OncologyWG
Oncology Working Group Repository
Ruby · 67 stars
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PhenotypeLibrary
A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohds...
R · 63 stars
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DatabaseConnector
An R package for connecting to databases using JDBC.
R · 57 stars
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Eunomia
An R package that facilitates access to a variety of OMOP CDM sample data sets.
R · 51 stars
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Cyclops
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized re...
C++ · 45 stars
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Data2Evidence
Data2Evidence is an end-to-end solution for management and analysis of OMOP data - https://data2evidence.org
TypeScript · 45 stars
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dbt-synthea
[Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
Python · 41 stars
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Hades
Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
R · 32 stars
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Capr
Cohort definition Application Programming in R
R · 24 stars
- 62 more repositories live on View on GitHub
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Difficulty 3/5 1-2 days Newbie friendliness 64/100
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
OHDSI/CommonDataModel#823 ·
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bug RxE
Difficulty 4/5 3-5 days Newbie friendliness 45/100
OHDSI/Vocabulary-v5.0#1312 ·
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Difficulty 4/5 3-5 days Newbie friendliness 30/100
OHDSI/CohortConstructor#780 ·
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Difficulty 4/5 3-5 days Newbie friendliness 52/100
OHDSI/Data2Evidence#3624 ·
Maintainers usually reply within 1 day
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Difficulty 4/5 3-5 days Newbie friendliness 44/100
OHDSI/Vocabulary-v5.0#1311 ·
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
OHDSI/CohortConstructor#778 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 76/100
OHDSI/PatientLevelPrediction#688 ·
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Difficulty 3/5 1-2 days Newbie friendliness 48/100
OHDSI/DataQualityDashboard#710 ·
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
OHDSI/DataQualityDashboard#709 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 62/100
OHDSI/DataQualityDashboard#708 ·
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Difficulty 5/5 Over a week Newbie friendliness 25/100
OHDSI/OmopIndices#70 · 1 comment ·
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Difficulty 4/5 3-5 days Newbie friendliness 55/100
OHDSI/Data2Evidence#3622 ·
Maintainers usually reply within 1 day
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Difficulty 2/5 1-3 hours Newbie friendliness 75/100
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Difficulty 3/5 1-2 days Newbie friendliness 57/100
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Difficulty 3/5 1-2 days Newbie friendliness 55/100
OHDSI/CohortSymmetry#380 · 1 comment ·
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Error when applying yearCohorts() to a cohort created with generateTargetDenominatorCohortSet()Open
Difficulty 2/5 1-3 hours Newbie friendliness 68/100
OHDSI/CohortConstructor#777 ·
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Difficulty 3/5 1-2 days Newbie friendliness 56/100
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
OHDSI/PhenotypeR#722 ·
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bug
Difficulty 2/5 1-3 hours Newbie friendliness 62/100
OHDSI/Data2Evidence#3614 ·
Maintainers usually reply within 1 day
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Difficulty 4/5 3-5 days Newbie friendliness 25/100
OHDSI/CohortSymmetry#378 ·
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OHDSI/Data2Evidence#3603 ·
Maintainers usually reply within 1 day
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Difficulty 2/5 1-3 hours Newbie friendliness 70/100
Maintainers usually reply within 1 day
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Difficulty 2/5 1-3 hours Newbie friendliness 58/100
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Difficulty 5/5 Over a week Newbie friendliness 35/100
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Difficulty 5/5 Over a week Newbie friendliness 25/100
OHDSI/Circepy#58 · 1 comment ·
Maintainers usually reply within 1 day
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RxE
Difficulty 4/5 3-5 days Newbie friendliness 43/100
OHDSI/Vocabulary-v5.0#1310 · 1 comment ·
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querySqlToAndromeda(appendToTable = TRUE) errors with "This ResultSet is closed" after appendingOpen
Difficulty 2/5 1-3 hours Newbie friendliness 82/100
OHDSI/DatabaseConnector#346 ·
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Difficulty 5/5 Over a week Newbie friendliness 35/100
Maintainers usually reply within 1 day
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Difficulty 4/5 3-5 days Newbie friendliness 45/100
OHDSI/Atlas3#436 · 1 comment ·
Maintainers usually reply within 1 day
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Difficulty 1/5 Under an hour Newbie friendliness 25/100
OHDSI/WaveformWG#12 ·
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Difficulty 4/5 3-5 days Newbie friendliness 35/100
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Difficulty 3/5 1-2 days Newbie friendliness 53/100
OHDSI/OmopViewer#428 ·
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Difficulty 2/5 1-3 hours Newbie friendliness 52/100
OHDSI/PhenotypeR#715 ·
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Difficulty 4/5 3-5 days Newbie friendliness 48/100
OHDSI/StudyAgent#106 ·
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wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 25/100
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spec wg-session-2026-10
Difficulty 1/5 Under an hour Newbie friendliness 53/100
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catalog spike wg-session-2026-10
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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architecture wg-session-2026-10
Difficulty 4/5 3-5 days Newbie friendliness 35/100
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vocabulary wg-session-2026-10
Difficulty 2/5 1-3 hours Newbie friendliness 45/100
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catalog wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 35/100
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catalog wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 35/100
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architecture spec wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 30/100
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architecture spec wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 35/100
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architecture spec wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 25/100
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architecture spec wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 25/100
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spec wg-session-2026-10
Difficulty 2/5 1-3 hours Newbie friendliness 55/100
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architecture spec wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 35/100
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architecture spec wg-session-2026-10
Difficulty 5/5 Over a week Newbie friendliness 25/100
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