Maintain registry of DPs for different ontologies
Nobody has claimed this yet.
Assessment
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Newbie friendliness
- 35/100
- Issue type
- Documentation
- Clarity
- Mostly clear
- Activity status
- Stale
- Domain
- documentation
Research direction
Start with the checklist in issue #22 and inspect the linked ontology repositories and tickets for existing design patterns. Mark entries done only when the referenced patterns are considered complete; otherwise add or preserve a cross-link to the relevant ticket.
Written by the indexing model from the issue text.
Description
Ontology Patterns
Currently this ticket is the primary source for this registry. Note that some implementations are experimental, and may not fully conform yet. Where no DPs exist, instead we can cross-link github tickets.
Tick box when patterns are considered 'done'
- uberon https://github.com/obophenotype/uberon/tree/master/patterns @cmungall
- cl https://github.com/obophenotype/cell-ontology/issues/450
- to https://github.com/Planteome/plant-trait-ontology/tree/add-dp/patterns @marieALaporte
- agro https://github.com/AgriculturalSemantics/agro/issues/15 @marieALaporte
- plant stress and disease ontology https://github.com/austinmeier/ontology-of-plant-stress @austinmeier
- envo https://github.com/EnvironmentOntology/envo/tree/master/src/envo/patterns @pbuttigieg
- oba https://github.com/obophenotype/bio-attribute-ontology/tree/master/src/ontology/patterns @cmungall
- hpo https://github.com/obophenotype/human-phenotype-ontology/tree/master/src/patterns @drseb
- go https://github.com/geneontology/design_patterns @dosumis
- ecto (note this is different from ENVO...) https://github.com/cmungall/environmental-conditions/tree/master/src/patterns @cmungall and @balhoff
- Dominant language
- Python
- Stars
- 49
- Forks
- 5
- PR merge metrics
- No merged PRs in 30d
Getting set up
This project ships no dev container, Dockerfile or contributing guide, so setting up is up to you: start from its README, and see our first-contribution guide for the general steps.
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
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